HL_6OLE_116

3D structure

PDB id

6OLE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human ribosome nascent chain complex (CDH1-RNC) stalled by a drug-like molecule with AP and PE tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUCCCUCG

Length

8 nucleotides

Bulged bases

6OLE|1|t|C|4981, 6OLE|1|t|U|4984, 6OLE|1|t|C|4985

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6OLE_116 not in the Motif Atlas

Geometric match to HL_7VTI_001

Geometric discrepancy: 0.3456

The information below is about HL_7VTI_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_89167.2

Basepair signature

cWW-F-F

Number of instances in this motif group

22

Unit IDs

6OLE|1|t|C|4979
6OLE|1|t|U|4980
6OLE|1|t|C|4981
6OLE|1|t|C|4982
6OLE|1|t|C|4983
6OLE|1|t|U|4984
6OLE|1|t|C|4985
6OLE|1|t|G|4986

Current chains

Chain t

28S ribosomal RNA

Nearby chains

Chain SI

40S ribosomal protein S8