HL_6OLF_004

3D structure

PDB id

6OLF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human ribosome nascent chain complex (CDH1-RNC) stalled by a drug-like molecule with AA and PE tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GGGUUCCUCCC

Length

11 nucleotides

Bulged bases

6OLF|1|D|U|124, 6OLF|1|D|C|128

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6OLF_004 not in the Motif Atlas

Geometric match to HL_7KI3_001

Geometric discrepancy: 0.1367

The information below is about HL_7KI3_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

6OLF|1|D|G|120
6OLF|1|D|G|121
6OLF|1|D|G|122
6OLF|1|D|U|123
6OLF|1|D|U|124
6OLF|1|D|C|125
6OLF|1|D|C|126
6OLF|1|D|U|127
6OLF|1|D|C|128
6OLF|1|D|C|129
6OLF|1|D|C|130

Current chains

Chain D

5.8S ribosomal RNA

Nearby chains

Chain Y

60S ribosomal protein L23a

Chain t

Large subunit ribosomal RNA; LSU rRNA