6OLF Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_6OLF_001 | 1/D/47:56 | No text annotation | geometric HL_7RQB_001 NA | |
| HL_6OLF_002 | 1/D/68:90 | No text annotation | homologous HL_8C3A_075 NA | |
| HL_6OLF_003 | 1/D/107:112 | No text annotation | homologous HL_5TBW_075 NA | |
| HL_6OLF_004 | 1/D/120:130 | No text annotation | geometric HL_7KI3_001 HL_75660.5 | |
| HL_6OLF_005 | 1/E/36:41 | No text annotation | geometric HL_5TBW_185 NA | |
| HL_6OLF_006 | 1/E/86:91 | GNRA | homologous HL_5TBW_186 NA | |
| HL_6OLF_007 | 1/S2/7:17 | No text annotation | homologous HL_8C3A_192 NA | |
| HL_6OLF_008 | 1/S2/69:80 | No text annotation | ||
| HL_6OLF_009 | 1/S2/156:162 | GNRA related | homologous HL_4V88_188 NA | |
| HL_6OLF_010 | 1/S2/188:211 | No text annotation | ||
| HL_6OLF_011 | 1/S2/288:295 | T-loop with 1 bulged base | homologous HL_8C3A_197 NA | |
| HL_6OLF_012 | 1/S2/322:329 | No text annotation | ||
| HL_6OLF_013 | 1/S2/377:387 | No text annotation | ||
| HL_6OLF_014 | 1/S2/416:421 | No text annotation | homologous HL_4V88_194 NA | |
| HL_6OLF_015 | 1/S2/441:452 | No text annotation | homologous HL_4V88_195 NA | |
| HL_6OLF_016 | 1/S2/462:467 | UNCG | homologous HL_4V88_196 NA | |
| HL_6OLF_017 | 1/S2/498:504 | No text annotation | homologous HL_4V88_197 NA | |
| HL_6OLF_018 | 1/S2/534:549 | No text annotation | ||
| HL_6OLF_019 | 1/S2/569:581 | No text annotation | homologous HL_4V88_199 NA | |
| HL_6OLF_126 | 1/S2/601:621 | No text annotation | ||
| HL_6OLF_020 | 1/S2/618:623 | GNRA variation | homologous HL_4V88_200 NA | |
| HL_6OLF_022 | 1/S2/820:828 | No text annotation | homologous HL_4V88_203 NA | |
| HL_6OLF_023 | 1/S2/832:842 | No text annotation | geometric HL_8KAL_003 HL_75660.5 | |
| HL_6OLF_137 | 1/S2/885:901 | No text annotation | ||
| HL_6OLF_025 | 1/S2/957:966 | No text annotation | homologous HL_4V88_206 NA | |
| HL_6OLF_026 | 1/S2/994:999 | GNRA | homologous HL_4V88_207 NA | |
| HL_6OLF_027 | 1/S2/1054:1064 | No text annotation | homologous HL_4V88_208 NA | |
| HL_6OLF_028 | 1/S2/1113:1120 | No text annotation | ||
| HL_6OLF_029 | 1/S2/1141:1146 | GNRA | homologous HL_4V88_210 NA | |
| HL_6OLF_030 | 1/S2/1178:1183 | GNRA | homologous HL_4V88_211 NA | |
| HL_6OLF_031 | 1/S2/1245:1254 | No text annotation | homologous HL_8P9A_215 HL_50779.4 | |
| HL_6OLF_032 | 1/S2/1294:1305 | No text annotation | ||
| HL_6OLF_033 | 1/S2/1353:1358 | GNRA | homologous HL_4V88_214 NA | |
| HL_6OLF_034 | 1/S2/1366:1373 | No text annotation | homologous HL_4V88_215 NA | |
| HL_6OLF_035 | 1/S2/1416:1424 | No text annotation | ||
| HL_6OLF_036 | 1/S2/1460:1466 | GNRA | homologous HL_4V88_217 NA | |
| HL_6OLF_037 | 1/S2/1565:1570 | GNRA | homologous HL_4V88_218 NA | |
| HL_6OLF_038 | 1/S2/1614:1625 | No text annotation | homologous HL_4V88_219 NA | |
| HL_6OLF_039 | 1/S2/1658:1666 | No text annotation | homologous HL_4V88_220 NA | |
| HL_6OLF_040 | 1/S2/1749:1785 | No text annotation | geometric HL_5TBW_006 NA | |
| HL_6OLF_041 | 1/S2/1847:1852 | GNRA variation | homologous HL_4V88_222 NA | |
| HL_6OLF_138 | 1/t/37:44 | No text annotation | homologous HL_8P9A_113 HL_30068.2 | |
| HL_6OLF_043 | 1/t/68:73 | No text annotation | homologous HL_5TBW_002 NA | |
| HL_6OLF_044 | 1/t/89:95 | No text annotation | homologous HL_8C3A_003 NA | |
| HL_6OLF_045 | 1/t/131:137 | No text annotation | ||
| HL_6OLF_046 | 1/t/199:208 | No text annotation | ||
| HL_6OLF_047 | 1/t/218:222 | No text annotation | geometric HL_4V9F_011 HL_75660.5 | |
| HL_6OLF_048 | 1/t/226:235 | No text annotation | ||
| HL_6OLF_049 | 1/t/283:292 | No text annotation | homologous HL_8C3A_008 NA | |
| HL_6OLF_050 | 1/t/308:317 | Pseudoknot geometry | homologous HL_5TBW_009 NA | |
| HL_6OLF_051 | 1/t/362:367 | GNRA | homologous HL_8C3A_010 NA | |
| HL_6OLF_052 | 1/t/387:392 | GNRA | homologous HL_8C3A_011 NA | |
| HL_6OLF_053 | 1/t/517:630 | No text annotation | ||
| HL_6OLF_054 | 1/t/750:891 | No text annotation | ||
| HL_6OLF_055 | 1/t/975:1048 | No text annotation | ||
| HL_6OLF_056 | 1/t/1088:1147 | No text annotation | ||
| HL_6OLF_057 | 1/t/1161:1166 | No text annotation | geometric HL_2Y8Y_001 HL_81100.2 | |
| HL_6OLF_058 | 1/t/1235:1240 | No text annotation | ||
| HL_6OLF_139 | 1/t/1300:1309 | T-loop with 2 stacked bulged bases | homologous HL_8P9A_126 HL_28252.9 | |
| HL_6OLF_128 | 1/t/1347:1356 | No text annotation | ||
| HL_6OLF_061 | 1/t/1372:1377 | GNRA | homologous HL_5TBW_016 NA | |
| HL_6OLF_129 | 1/t/1389:1394 | No text annotation | ||
| HL_6OLF_063 | 1/t/1417:1432 | No text annotation | geometric HL_1WZ2_007 HL_75660.5 | |
| HL_6OLF_064 | 1/t/1461:1468 | No text annotation | homologous HL_8C3A_018 NA | |
| HL_6OLF_065 | 1/t/1543:1548 | GNRA | homologous HL_5TBW_019 NA | |
| HL_6OLF_140 | 1/t/1575:1584 | No text annotation | homologous HL_8CRE_019 HL_88205.2 | |
| HL_6OLF_067 | 1/t/1609:1617 | No text annotation | homologous HL_5TBW_021 NA | |
| HL_6OLF_068 | 1/t/1657:1662 | Externally structured | homologous HL_8C3A_022 NA | |
| HL_6OLF_141 | 1/t/1743:1753 | No text annotation | ||
| HL_6OLF_070 | 1/t/1798:1805 | No text annotation | homologous HL_5TBW_024 NA | |
| HL_6OLF_071 | 1/t/1845:1851 | GNRA | homologous HL_8C3A_025 NA | |
| HL_6OLF_072 | 1/t/1867:1874 | No text annotation | homologous HL_5TBW_026 NA | |
| HL_6OLF_073 | 1/t/1954:1974 | No text annotation | ||
| HL_6OLF_074 | 1/t/1986:1995 | No text annotation | homologous HL_5TBW_028 NA | |
| HL_6OLF_075 | 1/t/2066:2250 | No text annotation | ||
| HL_6OLF_076 | 1/t/2296:2301 | GNRA | homologous HL_8C3A_030 NA | |
| HL_6OLF_142 | 1/t/2355:2363 | T-loop with 2 stacked bulged bases | homologous HL_8CRE_030 HL_28252.9 | |
| HL_6OLF_078 | 1/t/2399:2405 | Pseudoknot geometry with 3' bulge | geometric HL_5TBW_032 NA | |
| HL_6OLF_079 | 1/t/2437:2442 | GNRA variation | homologous HL_8C3A_033 NA | |
| HL_6OLF_080 | 1/t/2466:2470 | No text annotation | ||
| HL_6OLF_081 | 1/t/2502:2511 | No text annotation | homologous HL_5TBW_035 NA | |
| HL_6OLF_082 | 1/t/2540:2545 | GNRA | geometric HL_5D5L_001 HL_37824.8 | |
| HL_6OLF_083 | 1/t/2557:2562 | GNRA | homologous HL_8C3A_036 NA | |
| HL_6OLF_084 | 1/t/2603:2611 | No text annotation | homologous HL_8C3A_037 NA | |
| HL_6OLF_085 | 1/t/2643:2649 | No text annotation | homologous HL_8C3A_038 NA | |
| HL_6OLF_132 | 1/t/2683:2691 | No text annotation | ||
| HL_6OLF_086 | 1/t/2684:2689 | No text annotation | geometric HL_4V9F_011 HL_75660.5 | |
| HL_6OLF_087 | 1/t/2717:2721 | No text annotation | homologous HL_8C3A_040 NA | |
| HL_6OLF_088 | 1/t/2771:2778 | No text annotation | homologous HL_8C3A_041 NA | |
| HL_6OLF_089 | 1/t/2789:2795 | GNRA | homologous HL_5TBW_042 NA | |
| HL_6OLF_090 | 1/t/2851:2856 | UNCG | homologous HL_5TBW_043 NA | |
| HL_6OLF_091 | 1/t/2880:3569 | No text annotation | geometric HL_8C3A_054 NA | |
| HL_6OLF_092 | 1/t/3585:3589 | No text annotation | homologous HL_8C3A_045 NA | |
| HL_6OLF_093 | 1/t/3610:3620 | No text annotation | homologous HL_8C3A_046 NA | |
| HL_6OLF_094 | 1/t/3639:3645 | GNRA | homologous HL_8C3A_047 NA | |
| HL_6OLF_095 | 1/t/3695:3700 | GNRA | homologous HL_5TBW_048 NA | |
| HL_6OLF_096 | 1/t/3728:3738 | No text annotation | homologous HL_5TBW_049 NA | |
| HL_6OLF_097 | 1/t/3767:3775 | No text annotation | homologous HL_8C3A_050 NA | |
| HL_6OLF_098 | 1/t/3844:3853 | No text annotation | homologous HL_5TBW_051 NA | |
| HL_6OLF_099 | 1/t/4072:4076 | Mini UNCG | geometric HL_4YAZ_004 HL_48778.2 | |
| HL_6OLF_100 | 1/t/4104:4111 | No text annotation | geometric HL_5TBW_018 NA | |
| HL_6OLF_101 | 1/t/4155:4163 | No text annotation | homologous HL_5TBW_054 NA | |
| HL_6OLF_102 | 1/t/4172:4184 | No text annotation | homologous HL_5TBW_055 NA | |
| HL_6OLF_103 | 1/t/4212:4220 | No text annotation | homologous HL_8C3A_057 NA | |
| HL_6OLF_104 | 1/t/4232:4239 | Pseudoknot geometry | homologous HL_5TBW_057 NA | |
| HL_6OLF_105 | 1/t/4263:4271 | No text annotation | homologous HL_8C3A_059 NA | |
| HL_6OLF_106 | 1/t/4283:4288 | GNRA | homologous HL_8C3A_060 NA | |
| HL_6OLF_107 | 1/t/4314:4324 | No text annotation | geometric HL_2ZZM_002 HL_13963.3 | |
| HL_6OLF_108 | 1/t/4379:4387 | No text annotation | homologous HL_5TBW_061 NA | |
| HL_6OLF_109 | 1/t/4436:4443 | No text annotation | homologous HL_5TBW_062 NA | |
| HL_6OLF_135 | 1/t/4457:4467 | No text annotation | ||
| HL_6OLF_110 | 1/t/4459:4465 | No text annotation | geometric HL_5TBW_063 NA | |
| HL_6OLF_111 | 1/t/4502:4507 | GNRA | homologous HL_5TBW_064 NA | |
| HL_6OLF_112 | 1/t/4565:4570 | GNRA | geometric HL_5J7L_197 HL_37824.8 | |
| HL_6OLF_113 | 1/t/4608:4613 | Ribsomal LSU H95 | homologous HL_8C3A_067 NA | |
| HL_6OLF_114 | 1/t/4650:4664 | No text annotation | homologous HL_8C3A_068 NA | |
| HL_6OLF_115 | 1/t/4735:4817 | No text annotation | ||
| HL_6OLF_116 | 1/t/4865:4872 | No text annotation | geometric HL_4WF9_003 HL_75660.5 | |
| HL_6OLF_117 | 1/t/4933:4941 | No text annotation | geometric HL_5TBW_070 NA | |
| HL_6OLF_118 | 1/t/4979:4986 | UNCG variation | geometric HL_6VMY_004 HL_53890.2 | |
| HL_6OLF_119 | 1/u/13:22 | No text annotation | homologous HL_3WFS_001 NA | |
| HL_6OLF_120 | 1/u/31:39 | tRNA anticodon loop | homologous HL_5IBB_210 HL_06059.7 | |
| HL_6OLF_121 | 1/u/53:61 | T-loop with 2 stacked bulged bases | homologous HL_4WJ4_003 HL_28252.9 | |
| HL_6OLF_136 | 1/v/10:25 | No text annotation | ||
| HL_6OLF_122 | 1/v/12:24 | No text annotation | ||
| HL_6OLF_123 | 1/v/31:39 | tRNA anticodon loop | homologous HL_6UFG_007 HL_06059.7 | |
| HL_6OLF_124 | 1/v/55:58 | No text annotation | geometric HL_4KR9_003 HL_70782.2 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_6OLF_125 | No text annotation | ||
| HL_6OLF_021 | UNCG variation | ||
| HL_6OLF_024 | No text annotation | ||
| HL_6OLF_127 | No text annotation | ||
| HL_6OLF_042 | No text annotation | ||
| HL_6OLF_059 | No text annotation | ||
| HL_6OLF_060 | No text annotation | ||
| HL_6OLF_062 | GNRA-like with tWH | ||
| HL_6OLF_066 | No text annotation | ||
| HL_6OLF_130 | No text annotation | ||
| HL_6OLF_069 | No text annotation | ||
| HL_6OLF_077 | No text annotation | ||
| HL_6OLF_131 | No text annotation | ||
| HL_6OLF_133 | No text annotation | ||
| HL_6OLF_134 | tRNA anticodon loop |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_6OLF_001 | 1/D/13:19, 1/t/409:415 | Triple sheared with non-canonical cWW | homologous IL_5TBW_015 NA | |
| IL_6OLF_250 | 1/D/24:26, 1/t/342:345 | Isolated non-canonical cWW pair | geometric IL_7Y2B_001 NA | |
| IL_6OLF_002 | 1/D/25:26, 1/t/342:344 | Single bulged A | homologous IL_5TBW_013 NA | |
| IL_6OLF_003 | 1/D/32:33, 1/t/333:336 | Minor groove platform, major groove intercalation | geometric IL_1U9S_005 IL_95583.2 | |
| IL_6OLF_004 | 1/D/139:141, 1/t/16:18 | Isolated non-canonical cWW pair | geometric IL_7A0S_031 IL_87907.2 | |
| IL_6OLF_005 | 1/D/143:144, 1/t/12:14 | Single bulged U | homologous IL_5TBW_003 NA | |
| IL_6OLF_006 | 1/D/149:151, 1/t/6:7 | Single bulged C | geometric IL_7A0S_032 IL_61258.15 | |
| IL_6OLF_007 | 1/E/15:16, 1/E/62:64 | Single bulged A | homologous IL_5TBW_372 NA | |
| IL_6OLF_008 | 1/E/21:27, 1/E/52:57 | Minor groove platform related | homologous IL_5TBW_373 NA | |
| IL_6OLF_308 | 1/E/28:31, 1/E/46:51 | No text annotation | homologous IL_7A0S_104 IL_05192.5 | |
| IL_6OLF_010 | 1/E/32:36, 1/E/41:45 | Symmetric double minor groove platform | homologous IL_5TBW_376 NA | |
| IL_6OLF_011 | 1/E/71:78, 1/E/98:104 | 8x7 Sarcin-Ricin; G-bulge | geometric IL_7A0S_007 IL_04346.10 | |
| IL_6OLF_012 | 1/E/79:81, 1/E/95:97 | Isolated non-canonical cWW pair | geometric IL_7A0S_107 IL_07785.1 | |
| IL_6OLF_255 | 1/E/81:85, 1/E/92:95 | Tandem non-canonical cWW pairs | geometric IL_1MFQ_004 IL_85033.2 | |
| IL_6OLF_013 | 1/E/82:85, 1/E/92:94 | Isolated non-canonical cWW pair | homologous IL_5TBW_378 NA | |
| IL_6OLF_014 | 1/S2/23:25, 1/S2/649:651 | Isolated non-canonical cWW pair | geometric IL_4M4O_001 IL_87907.2 | |
| IL_6OLF_016 | 1/S2/34:36, 1/S2/519:521 | Isolated non-canonical cWW pair | homologous IL_4V88_385 NA | |
| IL_6OLF_017 | 1/S2/37:40, 1/S2/514:518 | Double sheared | geometric IL_7A0S_081 IL_09705.15 | |
| IL_6OLF_018 | 1/S2/41:47, 1/S2/479:481 | No text annotation | homologous IL_4V88_387 NA | |
| IL_6OLF_019 | 1/S2/49:51, 1/S2/476:477 | Minor groove platform | homologous IL_4V88_388 NA | |
| IL_6OLF_020 | 1/S2/57:62, 1/S2/86:88 | No text annotation | homologous IL_4V88_389 NA | |
| IL_6OLF_021 | 1/S2/63:68, 1/S2/81:85 | No text annotation | homologous IL_4V88_390 NA | |
| IL_6OLF_022 | 1/S2/108:110, 1/S2/351:353 | Isolated non-canonical cWW pair | geometric IL_1KFO_003 NA | |
| IL_6OLF_023 | 1/S2/110:112, 1/S2/349:351 | Isolated non-canonical cWW pair | geometric IL_3SZX_003 IL_87907.2 | |
| IL_6OLF_257 | 1/S2/112:121, 1/S2/343:349 | No text annotation | ||
| IL_6OLF_258 | 1/S2/145:151, 1/S2/167:174 | No text annotation | homologous IL_8C3A_402 NA | |
| IL_6OLF_259 | 1/S2/152:154, 1/S2/164:166 | No text annotation | homologous IL_8P9A_384 IL_44465.1 | |
| IL_6OLF_028 | 1/S2/216:219, 1/S2/302:309 | Tandem non-canonical cWW pairs | geometric IL_1GID_008 NA | |
| IL_6OLF_029 | 1/S2/223:288, 1/S2/295:298 | No text annotation | ||
| IL_6OLF_030 | 1/S2/312:314, 1/S2/336:337 | Single bulged A | homologous IL_4V88_399 NA | |
| IL_6OLF_031 | 1/S2/317:319, 1/S2/332:333 | Single stack bend | geometric IL_5TBW_009 NA | |
| IL_6OLF_032 | 1/S2/359:364, 1/S2/396:403 | Kink-turn with non-sequential stacking | homologous IL_4V88_402 NA | |
| IL_6OLF_033 | 1/S2/366:371, 1/S2/393:394 | No text annotation | geometric IL_5Y58_001 IL_59877.1 | |
| IL_6OLF_034 | 1/S2/411:413, 1/S2/424:429 | No text annotation | homologous IL_4V88_404 NA | |
| IL_6OLF_035 | 1/S2/437:439, 1/S2/454:456 | Isolated cWH basepair | homologous IL_4V88_405 NA | |
| IL_6OLF_036 | 1/S2/459:461, 1/S2/468:470 | Isolated near basepair | homologous IL_4V88_406 NA | |
| IL_6OLF_260 | 1/S2/491:496, 1/S2/506:509 | C-loop with extra cWW pair | geometric IL_4V88_408 NA | |
| IL_6OLF_038 | 1/S2/563:565, 1/S2/585:592 | Isolated tHS basepair with bulges | geometric IL_7RQB_082 NA | |
| IL_6OLF_039 | 1/S2/565:569, 1/S2/581:585 | No text annotation | ||
| IL_6OLF_040 | 1/S2/599:606, 1/S2/636:637 | SSU/LSU pseudoknot | homologous IL_4V88_413 NA | |
| IL_6OLF_261 | 1/S2/599:600, 1/S2/622:637 | No text annotation | ||
| IL_6OLF_041 | 1/S2/606:608, 1/S2/635:636 | Single bulged U | geometric IL_4V88_407 NA | |
| IL_6OLF_042 | 1/S2/611:617, 1/S2/624:632 | Kink-turn related | homologous IL_4V88_415 NA | |
| IL_6OLF_043 | 1/S2/663:665, 1/S2/1162:1164 | Isolated non-canonical cWW pair | geometric IL_4KNQ_003 IL_87907.2 | |
| IL_6OLF_044 | 1/S2/665:671, 1/S2/1161:1162 | No text annotation | geometric IL_4LFB_022 IL_38186.6 | |
| IL_6OLF_045 | 1/S2/673:675, 1/S2/1030:1032 | Isolated non-canonical cWW pair | homologous IL_4V88_417 NA | |
| IL_6OLF_046 | 1/S2/676:680, 1/S2/1025:1029 | tSH-tHW-tHS | homologous IL_4V88_418 NA | |
| IL_6OLF_047 | 1/S2/802:803, 1/S2/860:863 | Major groove minor groove platform; mini C-loop | homologous IL_4V88_423 NA | |
| IL_6OLF_048 | 1/S2/805:807, 1/S2/856:858 | Isolated non-canonical cWW pair | homologous IL_4V88_424 NA | |
| IL_6OLF_309 | 1/S2/807:815, 1/S2/849:856 | No text annotation | homologous IL_8CRE_430 IL_59049.1 | |
| IL_6OLF_050 | 1/S2/874:876, 1/S2/910:912 | Isolated non-canonical cWW pair | geometric IL_5Y85_006 IL_87907.2 | |
| IL_6OLF_051 | 1/S2/877:879, 1/S2/907:909 | Isolated non-canonical cWW pair | geometric IL_4J50_002 IL_87907.2 | |
| IL_6OLF_052 | 1/S2/879:881, 1/S2/905:907 | Isolated non-canonical cWW pair | geometric IL_5ZTM_001 IL_57744.1 | |
| IL_6OLF_053 | 1/S2/922:923, 1/S2/1019:1022 | Major groove platform; stack outside cWW | geometric IL_4V88_428 NA | |
| IL_6OLF_262 | 1/S2/925:926, 1/S2/1015:1017 | Single bulged U | geometric IL_6UFH_004 IL_89505.4 | |
| IL_6OLF_055 | 1/S2/927:931, 1/S2/1010:1014 | No text annotation | geometric IL_5TBW_121 NA | |
| IL_6OLF_263 | 1/S2/928:936, 1/S2/1007:1013 | No text annotation | ||
| IL_6OLF_056 | 1/S2/931:936, 1/S2/1007:1010 | No text annotation | ||
| IL_6OLF_057 | 1/S2/936:937, 1/S2/1005:1007 | Single stack bend | geometric IL_7RQB_091 NA | |
| IL_6OLF_310 | 1/S2/942:945, 1/S2/981:984 | Tandem non-canonical cWW pairs | homologous IL_8P9A_421 IL_85033.2 | |
| IL_6OLF_059 | 1/S2/952:956, 1/S2/967:974 | Kink-turn | homologous IL_4V88_434 NA | |
| IL_6OLF_060 | 1/S2/1042:1047, 1/S2/1071:1073 | Other IL | homologous IL_4V88_435 NA | |
| IL_6OLF_061 | 1/S2/1047:1051, 1/S2/1067:1071 | tSH-tHW-tHS | geometric IL_4V88_436 NA | |
| IL_6OLF_062 | 1/S2/1091:1093, 1/S2/1152:1158 | No text annotation | homologous IL_4V88_437 NA | |
| IL_6OLF_063 | 1/S2/1098:1101, 1/S2/1131:1134 | Tandem non-canonical cWW pairs | geometric IL_4V88_438 NA | |
| IL_6OLF_064 | 1/S2/1101:1103, 1/S2/1129:1131 | Isolated non-canonical cWW pair | geometric IL_4V88_465 NA | |
| IL_6OLF_065 | 1/S2/1108:1110, 1/S2/1123:1124 | Minor groove platform | geometric IL_4V88_412 NA | |
| IL_6OLF_066 | 1/S2/1168:1175, 1/S2/1186:1191 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | homologous IL_4V88_440 NA | |
| IL_6OLF_266 | 1/S2/1203:1204, 1/S2/1694:1696 | Single bulged A | homologous IL_8C3A_447 NA | |
| IL_6OLF_068 | 1/S2/1206:1208, 1/S2/1691:1692 | Single bulged G | homologous IL_4V88_442 NA | |
| IL_6OLF_069 | 1/S2/1214:1217, 1/S2/1681:1685 | C-loop | homologous IL_4V88_443 NA | |
| IL_6OLF_070 | 1/S2/1230:1232, 1/S2/1526:1528 | Isolated non-canonical cWW pair | homologous IL_4V88_444 NA | |
| IL_6OLF_071 | 1/S2/1235:1236, 1/S2/1521:1523 | Minor groove platform | homologous IL_4V88_445 NA | |
| IL_6OLF_072 | 1/S2/1270:1272, 1/S2/1510:1512 | Isolated non-canonical cWW pair | geometric IL_5ED2_004 NA | |
| IL_6OLF_073 | 1/S2/1282:1290, 1/S2/1309:1315 | No text annotation | ||
| IL_6OLF_074 | 1/S2/1291:1293, 1/S2/1306:1308 | No text annotation | homologous IL_4V88_448 NA | |
| IL_6OLF_075 | 1/S2/1325:1327, 1/S2/1502:1503 | Single bulged U | homologous IL_4V88_449 NA | |
| IL_6OLF_076 | 1/S2/1329:1333, 1/S2/1498:1500 | Isolated cWS basepair | geometric IL_4V88_450 NA | |
| IL_6OLF_269 | 1/S2/1329:1335, 1/S2/1492:1500 | No text annotation | geometric IL_4V88_510 NA | |
| IL_6OLF_270 | 1/S2/1333:1335, 1/S2/1492:1498 | No text annotation | homologous IL_8P9A_440 IL_49061.1 | |
| IL_6OLF_271 | 1/S2/1337:1338, 1/S2/1488:1490 | Single bulged A | homologous IL_8C3A_458 NA | |
| IL_6OLF_079 | 1/S2/1347:1349, 1/S2/1380:1382 | Isolated cWH basepair | homologous IL_4V88_453 NA | |
| IL_6OLF_272 | 1/S2/1363:1365, 1/S2/1374:1375 | Minor groove platform | homologous IL_8C3A_460 NA | |
| IL_6OLF_081 | 1/S2/1395:1399, 1/S2/1447:1450 | Tandem non-canonical cWW pairs | geometric IL_3WBM_003 IL_85033.2 | |
| IL_6OLF_082 | 1/S2/1402:1405, 1/S2/1441:1444 | Minor groove platform | homologous IL_4V88_456 NA | |
| IL_6OLF_083 | 1/S2/1408:1409, 1/S2/1432:1438 | Multiple bulged bases | geometric IL_1R3E_002 IL_84476.1 | |
| IL_6OLF_084 | 1/S2/1412:1413, 1/S2/1427:1429 | Single bulged G | geometric IL_5J7L_019 IL_00225.14 | |
| IL_6OLF_085 | 1/S2/1537:1539, 1/S2/1594:1596 | Isolated non-canonical cWW pair | geometric IL_3SZX_002 IL_87907.2 | |
| IL_6OLF_273 | 1/S2/1541:1550, 1/S2/1582:1592 | No text annotation | ||
| IL_6OLF_086 | 1/S2/1550:1558, 1/S2/1577:1582 | No text annotation | ||
| IL_6OLF_087 | 1/S2/1560:1562, 1/S2/1573:1575 | Isolated non-canonical cWW pair | geometric IL_4E48_004 IL_87907.2 | |
| IL_6OLF_088 | 1/S2/1604:1610, 1/S2/1629:1635 | No text annotation | homologous IL_8C3A_469 NA | |
| IL_6OLF_274 | 1/S2/1604:1611, 1/S2/1628:1635 | No text annotation | geometric IL_4WF9_119 NA | |
| IL_6OLF_089 | 1/S2/1700:1702, 1/S2/1833:1836 | No text annotation | homologous IL_4V88_463 NA | |
| IL_6OLF_090 | 1/S2/1702:1705, 1/S2/1829:1833 | No text annotation | homologous IL_8C3A_471 NA | |
| IL_6OLF_091 | 1/S2/1706:1708, 1/S2/1826:1828 | Isolated non-canonical cWW pair | geometric IL_4V88_465 NA | |
| IL_6OLF_092 | 1/S2/1708:1711, 1/S2/1822:1826 | No text annotation | geometric IL_6AZ4_001 NA | |
| IL_6OLF_093 | 1/S2/1714:1716, 1/S2/1817:1819 | Isolated non-canonical cWW pair | homologous IL_4V88_467 NA | |
| IL_6OLF_094 | 1/S2/1717:1726, 1/S2/1807:1816 | No text annotation | ||
| IL_6OLF_275 | 1/S2/1717:1729, 1/S2/1805:1816 | No text annotation | ||
| IL_6OLF_276 | 1/S2/1729:1731, 1/S2/1803:1805 | Isolated non-canonical cWW pair | homologous IL_8C3A_477 NA | |
| IL_6OLF_096 | 1/S2/1733:1736, 1/S2/1798:1801 | Double sheared | homologous IL_4V88_471 NA | |
| IL_6OLF_097 | 1/S2/1739:1741, 1/S2/1793:1795 | Isolated non-canonical cWW pair | geometric IL_3SZX_001 IL_87907.2 | |
| IL_6OLF_098 | 1/S2/1742:1746, 1/S2/1788:1792 | Triple sheared | homologous IL_4V88_474 NA | |
| IL_6OLF_311 | 1/t/30:37, 1/t/44:52 | tSH-tHW-tHH-tHS | homologous IL_8CRE_005 IL_84694.2 | |
| IL_6OLF_100 | 1/t/81:88, 1/t/96:102 | No text annotation | homologous IL_8C3A_006 NA | |
| IL_6OLF_101 | 1/t/127:129, 1/t/139:140 | Single stack bend | geometric IL_7A0S_054 IL_26793.1 | |
| IL_6OLF_102 | 1/t/129:131, 1/t/137:139 | No text annotation | ||
| IL_6OLF_103 | 1/t/158:160, 1/t/267:269 | Isolated non-canonical cWW pair | geometric IL_6OL3_002 IL_87907.2 | |
| IL_6OLF_104 | 1/t/161:164, 1/t/263:266 | Tandem non-canonical cWW pairs | geometric IL_1D4R_001 IL_85033.2 | |
| IL_6OLF_105 | 1/t/165:171, 1/t/257:262 | No text annotation | ||
| IL_6OLF_106 | 1/t/171:175, 1/t/253:257 | Partly complementary | geometric IL_7VYX_008 IL_49751.4 | |
| IL_6OLF_278 | 1/t/171:185, 1/t/248:257 | No text annotation | ||
| IL_6OLF_107 | 1/t/175:185, 1/t/248:253 | No text annotation | ||
| IL_6OLF_279 | 1/t/188:218, 1/t/222:245 | No text annotation | ||
| IL_6OLF_108 | 1/t/381:384, 1/t/395:408 | No text annotation | homologous IL_8C3A_015 NA | |
| IL_6OLF_109 | 1/t/437:440, 1/t/1283:1287 | No text annotation | ||
| IL_6OLF_110 | 1/t/450:453, 1/t/689:692 | Tandem non-canonical cWW pairs | geometric IL_6CZR_168 NA | |
| IL_6OLF_111 | 1/t/454:456, 1/t/686:688 | Isolated non-canonical cWW contact | geometric IL_5UNE_001 IL_44465.1 | |
| IL_6OLF_312 | 1/t/454:459, 1/t/683:688 | No text annotation | geometric IL_3IGI_015 IL_82292.1 | |
| IL_6OLF_112 | 1/t/456:458, 1/t/685:686 | Single stack bend | geometric IL_7A0S_054 IL_26793.1 | |
| IL_6OLF_113 | 1/t/458:460, 1/t/682:685 | No text annotation | geometric IL_4P3T_002 NA | |
| IL_6OLF_114 | 1/t/461:466, 1/t/676:681 | No text annotation | ||
| IL_6OLF_115 | 1/t/467:469, 1/t/673:675 | Isolated cWH basepair | geometric IL_4KQ0_004 IL_10167.6 | |
| IL_6OLF_283 | 1/t/467:472, 1/t/670:675 | No text annotation | geometric IL_5TBW_476 NA | |
| IL_6OLF_116 | 1/t/469:470, 1/t/671:673 | Single stack bend | geometric IL_4V83_236 IL_90729.1 | |
| IL_6OLF_117 | 1/t/470:472, 1/t/670:671 | Single stack bend | geometric IL_4V83_236 IL_90729.1 | |
| IL_6OLF_118 | 1/t/472:475, 1/t/667:670 | Tandem non-canonical cWW pairs | geometric IL_6CZR_168 NA | |
| IL_6OLF_119 | 1/t/475:481, 1/t/663:667 | No text annotation | ||
| IL_6OLF_284 | 1/t/481:485, 1/t/656:663 | No text annotation | ||
| IL_6OLF_121 | 1/t/486:490, 1/t/651:655 | No text annotation | geometric IL_5TBW_121 NA | |
| IL_6OLF_122 | 1/t/491:493, 1/t/649:650 | No text annotation | ||
| IL_6OLF_123 | 1/t/493:498, 1/t/648:649 | Single stack bend | geometric IL_5TBW_375 NA | |
| IL_6OLF_124 | 1/t/502:504, 1/t/643:644 | Single bulged A | geometric IL_6WPI_001 IL_31462.7 | |
| IL_6OLF_285 | 1/t/506:509, 1/t/640:641 | Multiple bulged bases | geometric IL_8C3A_090 NA | |
| IL_6OLF_126 | 1/t/514:515, 1/t/632:635 | Single stack bend | geometric IL_4C7O_002 IL_90729.1 | |
| IL_6OLF_127 | 1/t/699:700, 1/t/1270:1272 | Single bulged G | geometric IL_4LFB_036 IL_00225.14 | |
| IL_6OLF_128 | 1/t/713:715, 1/t/929:933 | No text annotation | ||
| IL_6OLF_129 | 1/t/717:726, 1/t/915:927 | No text annotation | ||
| IL_6OLF_313 | 1/t/727:729, 1/t/913:914 | No text annotation | ||
| IL_6OLF_131 | 1/t/731:733, 1/t/909:911 | Isolated non-canonical cWW pair | geometric IL_7A0S_031 IL_87907.2 | |
| IL_6OLF_314 | 1/t/735:743, 1/t/898:907 | No text annotation | ||
| IL_6OLF_132 | 1/t/1057:1059, 1/t/1218:1219 | Single stack bend | geometric IL_5J7L_032 IL_26793.1 | |
| IL_6OLF_133 | 1/t/1059:1065, 1/t/1201:1218 | No text annotation | ||
| IL_6OLF_288 | 1/t/1060:1067, 1/t/1195:1217 | No text annotation | ||
| IL_6OLF_134 | 1/t/1065:1067, 1/t/1195:1201 | No text annotation | ||
| IL_6OLF_135 | 1/t/1068:1072, 1/t/1189:1194 | No text annotation | geometric IL_5TBW_121 NA | |
| IL_6OLF_136 | 1/t/1072:1074, 1/t/1188:1189 | Single stack bend | geometric IL_7KGA_003 IL_90729.1 | |
| IL_6OLF_137 | 1/t/1074:1077, 1/t/1184:1188 | No text annotation | ||
| IL_6OLF_138 | 1/t/1077:1079, 1/t/1182:1184 | Isolated non-canonical cWW pair | geometric IL_4M4O_002 IL_87907.2 | |
| IL_6OLF_139 | 1/t/1156:1158, 1/t/1169:1171 | Isolated cWH basepair | geometric IL_5F5F_001 IL_10167.6 | |
| IL_6OLF_140 | 1/t/1340:1343, 1/t/1362:1365 | No text annotation | ||
| IL_6OLF_289 | 1/t/1340:1344, 1/t/1359:1365 | No text annotation | ||
| IL_6OLF_141 | 1/t/1343:1344, 1/t/1359:1362 | Multiple bulged bases | geometric IL_6JXM_001 IL_84476.1 | |
| IL_6OLF_142 | 1/t/1408:1412, 1/t/1437:1442 | Triple sheared related | geometric IL_4V9F_018 IL_97631.1 | |
| IL_6OLF_143 | 1/t/1413:1417, 1/t/1432:1436 | Double sheared with non-canonical cWW | geometric IL_5J7L_274 IL_17948.2 | |
| IL_6OLF_144 | 1/t/1449:1450, 1/t/1478:1480 | Single bulged A | homologous IL_8C3A_026 NA | |
| IL_6OLF_145 | 1/t/1456:1458, 1/t/1471:1472 | Single stack bend | geometric IL_4C7O_002 IL_90729.1 | |
| IL_6OLF_146 | 1/t/1502:1504, 1/t/1637:1639 | Isolated non-canonical cWW pair | geometric IL_4WF9_020 IL_87907.2 | |
| IL_6OLF_147 | 1/t/1504:1508, 1/t/1630:1637 | tHW-tHW cross-strand stack | homologous IL_5TBW_028 NA | |
| IL_6OLF_148 | 1/t/1532:1533, 1/t/1558:1560 | Single bulged G | geometric IL_4LVW_002 IL_00225.14 | |
| IL_6OLF_149 | 1/t/1533:1537, 1/t/1554:1558 | Triple sheared | homologous IL_8C3A_033 NA | |
| IL_6OLF_315 | 1/t/1568:1571, 1/t/1587:1589 | No text annotation | homologous IL_8CRE_034 IL_51387.3 | |
| IL_6OLF_151 | 1/t/1572:1574, 1/t/1585:1586 | Single bulged U | homologous IL_8C3A_035 NA | |
| IL_6OLF_152 | 1/t/1606:1608, 1/t/1618:1622 | Multiple bulged bases | geometric IL_7A0S_021 IL_06549.2 | |
| IL_6OLF_153 | 1/t/1653:1655, 1/t/1664:1666 | Isolated non-canonical cWW pair | homologous IL_8C3A_037 NA | |
| IL_6OLF_154 | 1/t/1668:1670, 1/t/1829:1832 | No text annotation | ||
| IL_6OLF_155 | 1/t/1676:1703, 1/t/1822:1823 | 180 degree turn | homologous IL_5TBW_036 NA | |
| IL_6OLF_156 | 1/t/1705:1707, 1/t/1819:1820 | Single bulged G | homologous IL_8C3A_040 NA | |
| IL_6OLF_157 | 1/t/1714:1719, 1/t/1774:1779 | 5x5 Sarcin-Ricin with intercalated A; G-bulge | geometric IL_7A0S_027 NA | |
| IL_6OLF_291 | 1/t/1719:1720, 1/t/1772:1774 | Minor groove platform | homologous IL_8P9A_267 IL_51454.3 | |
| IL_6OLF_159 | 1/t/1721:1726, 1/t/1768:1771 | C-loop | geometric IL_5TBW_040 NA | |
| IL_6OLF_160 | 1/t/1727:1731, 1/t/1763:1767 | No text annotation | homologous IL_8C3A_044 NA | |
| IL_6OLF_161 | 1/t/1731:1733, 1/t/1761:1763 | Isolated non-canonical cWW pair | homologous IL_5TBW_042 NA | |
| IL_6OLF_316 | 1/t/1735:1739, 1/t/1757:1759 | No text annotation | geometric IL_2OEU_001 IL_46387.1 | |
| IL_6OLF_163 | 1/t/1796:1798, 1/t/1805:1806 | Single bulged A | homologous IL_5TBW_045 NA | |
| IL_6OLF_317 | 1/t/1839:1841, 1/t/1855:1857 | Isolated non-canonical cWW pair | homologous IL_8P9A_274 IL_87907.2 | |
| IL_6OLF_165 | 1/t/1886:1890, 1/t/2048:2052 | UAA/GAN | homologous IL_5TBW_048 NA | |
| IL_6OLF_166 | 1/t/1892:1899, 1/t/2045:2046 | SSU/LSU pseudoknot | homologous IL_8C3A_052 NA | |
| IL_6OLF_167 | 1/t/1899:1901, 1/t/2044:2045 | No text annotation | ||
| IL_6OLF_168 | 1/t/1901:1903, 1/t/2043:2044 | No text annotation | ||
| IL_6OLF_169 | 1/t/1907:1925, 1/t/2019:2039 | No text annotation | ||
| IL_6OLF_170 | 1/t/1927:1929, 1/t/2016:2017 | Single bulged U | homologous IL_8C3A_056 NA | |
| IL_6OLF_171 | 1/t/1938:1946, 1/t/2003:2007 | Kink-turn | homologous IL_8C3A_057 NA | |
| IL_6OLF_172 | 1/t/2064:2066, 1/t/2250:2252 | Isolated non-canonical cWW pair | geometric IL_1Y27_001 IL_87907.2 | |
| IL_6OLF_173 | 1/t/2269:2271, 1/t/2321:2324 | No text annotation | homologous IL_8C3A_061 NA | |
| IL_6OLF_174 | 1/t/2278:2280, 1/t/2313:2314 | Single bulged A | geometric IL_3OXE_001 IL_31462.7 | |
| IL_6OLF_175 | 1/t/2281:2288, 1/t/2308:2312 | Kink-turn | homologous IL_5TBW_059 NA | |
| IL_6OLF_176 | 1/t/2291:2293, 1/t/2304:2305 | Single bulged A | geometric IL_5WWT_001 IL_31462.7 | |
| IL_6OLF_177 | 1/t/2337:2343, 1/t/3829:3834 | 7x6 Sarcin-Ricin; G-bulge | homologous IL_5TBW_061 NA | |
| IL_6OLF_178 | 1/t/2385:2388, 1/t/2762:2763 | Multiple bulged bases | geometric IL_4YAZ_008 IL_82107.5 | |
| IL_6OLF_179 | 1/t/2394:2399, 1/t/2405:2408 | No text annotation | ||
| IL_6OLF_180 | 1/t/2425:2429, 1/t/2488:2493 | UAA/GAN | homologous IL_8C3A_067 NA | |
| IL_6OLF_294 | 1/t/2456:2458, 1/t/2478:2479 | Minor groove platform | geometric IL_2QWY_009 IL_51454.3 | |
| IL_6OLF_182 | 1/t/2521:2526, 1/t/2751:2753 | Isolated non-canonical cWW pair | geometric IL_4RUM_001 IL_57744.1 | |
| IL_6OLF_183 | 1/t/2528:2529, 1/t/2747:2749 | Single bulged U | geometric IL_2A64_002 IL_89505.4 | |
| IL_6OLF_184 | 1/t/2568:2572, 1/t/2731:2735 | Triple sheared | geometric IL_5TBW_067 NA | |
| IL_6OLF_185 | 1/t/2592:2593, 1/t/2703:2705 | Single bulged C | homologous IL_5TBW_069 NA | |
| IL_6OLF_186 | 1/t/2593:2594, 1/t/2701:2703 | Single stack bend | geometric IL_4C7O_002 IL_90729.1 | |
| IL_6OLF_187 | 1/t/2625:2627, 1/t/2664:2667 | Decoding loop related | geometric IL_2O3X_003 IL_31737.3 | |
| IL_6OLF_188 | 1/t/2630:2632, 1/t/2660:2661 | Single bulged G | geometric IL_3NDB_004 IL_00225.14 | |
| IL_6OLF_189 | 1/t/2635:2641, 1/t/2651:2657 | Kink-turn | homologous IL_5TBW_073 NA | |
| IL_6OLF_190 | 1/t/2683:2684, 1/t/2689:2691 | No text annotation | ||
| IL_6OLF_191 | 1/t/2811:2817, 1/t/3821:3824 | No text annotation | homologous IL_5TBW_074 NA | |
| IL_6OLF_192 | 1/t/2823:2825, 1/t/3813:3815 | No text annotation | homologous IL_8C3A_081 NA | |
| IL_6OLF_193 | 1/t/2826:2829, 1/t/3811:3812 | Major groove platform; stack outside cWW | homologous IL_8C3A_082 NA | |
| IL_6OLF_297 | 1/t/2826:2834, 1/t/3808:3812 | No text annotation | homologous IL_8C3A_484 NA | |
| IL_6OLF_194 | 1/t/2829:2834, 1/t/3808:3811 | Intercalated tWH | geometric IL_4WF9_065 IL_76758.2 | |
| IL_6OLF_195 | 1/t/2846:2851, 1/t/2856:2862 | tSH-tSH-tHH-tHS | geometric IL_4V9F_063 IL_47346.2 | |
| IL_6OLF_196 | 1/t/2868:2870, 1/t/3581:3583 | Isolated non-canonical cWW pair | homologous IL_8C3A_085 NA | |
| IL_6OLF_197 | 1/t/2875:2876, 1/t/3573:3576 | No text annotation | homologous IL_8C3A_086 NA | |
| IL_6OLF_198 | 1/t/3603:3604, 1/t/3798:3800 | Single bulged A | homologous IL_5TBW_082 NA | |
| IL_6OLF_199 | 1/t/3631:3636, 1/t/3648:3655 | Kink-turn related | homologous IL_5TBW_083 NA | |
| IL_6OLF_200 | 1/t/3671:3674, 1/t/3720:3721 | Major groove intercalation | homologous IL_5TBW_084 NA | |
| IL_6OLF_201 | 1/t/3675:3676, 1/t/3716:3719 | Multiple bulged bases | homologous IL_8C3A_090 NA | |
| IL_6OLF_202 | 1/t/3679:3685, 1/t/3710:3713 | No text annotation | ||
| IL_6OLF_203 | 1/t/3686:3692, 1/t/3703:3709 | No text annotation | homologous IL_5TBW_088 NA | |
| IL_6OLF_204 | 1/t/3751:3752, 1/t/3782:3785 | Bulged stacked bases | homologous IL_5TBW_089 NA | |
| IL_6OLF_205 | 1/t/3752:3763, 1/t/3779:3782 | No text annotation | geometric IL_5TBW_090 NA | |
| IL_6OLF_206 | 1/t/3866:3869, 1/t/4525:4527 | Major groove platform with extra pair | homologous IL_5TBW_091 NA | |
| IL_6OLF_207 | 1/t/3871:3873, 1/t/4520:4523 | No text annotation | homologous IL_8C3A_097 NA | |
| IL_6OLF_208 | 1/t/3884:3886, 1/t/4350:4351 | Single bulged U | homologous IL_8C3A_098 NA | |
| IL_6OLF_209 | 1/t/3887:3888, 1/t/4346:4349 | Minor groove platform | homologous IL_5TBW_094 NA | |
| IL_6OLF_210 | 1/t/3898:3900, 1/t/4143:4146 | No text annotation | homologous IL_8C3A_100 NA | |
| IL_6OLF_211 | 1/t/4052:4058, 1/t/4123:4126 | No text annotation | homologous IL_5TBW_096 NA | |
| IL_6OLF_212 | 1/t/4064:4072, 1/t/4076:4083 | No text annotation | ||
| IL_6OLF_318 | 1/t/4153:4154, 1/t/4164:4166 | Single bulged A | homologous IL_8P9A_325 IL_31462.7 | |
| IL_6OLF_214 | 1/t/4205:4207, 1/t/4225:4229 | Isolated tHS basepair with bulges | homologous IL_5TBW_099 NA | |
| IL_6OLF_215 | 1/t/4257:4259, 1/t/4276:4277 | Single stack bend | geometric IL_5J7L_269 IL_26793.1 | |
| IL_6OLF_216 | 1/t/4259:4260, 1/t/4274:4276 | Single stack bend | geometric IL_5J7L_032 IL_26793.1 | |
| IL_6OLF_319 | 1/t/4309:4312, 1/t/4326:4327 | Single stack bend | geometric IL_8P9A_328 IL_90729.1 | |
| IL_6OLF_218 | 1/t/4362:4363, 1/t/4404:4406 | Major groove platform | geometric IL_5TBW_102 NA | |
| IL_6OLF_219 | 1/t/4363:4365, 1/t/4402:4404 | Isolated non-canonical cWW pair | geometric IL_5TBW_103 NA | |
| IL_6OLF_300 | 1/t/4363:4369, 1/t/4397:4404 | No text annotation | ||
| IL_6OLF_220 | 1/t/4365:4369, 1/t/4397:4402 | No text annotation | ||
| IL_6OLF_221 | 1/t/4374:4378, 1/t/4388:4392 | No text annotation | homologous IL_8C3A_114 NA | |
| IL_6OLF_222 | 1/t/4418:4420, 1/t/4482:4486 | Isolated non-canonical cWW with bulges | homologous IL_5TBW_108 NA | |
| IL_6OLF_223 | 1/t/4420:4421, 1/t/4479:4482 | Multiple bulged bases | geometric IL_5TBW_109 NA | |
| IL_6OLF_224 | 1/t/4428:4432, 1/t/4447:4453 | No text annotation | ||
| IL_6OLF_225 | 1/t/4457:4459, 1/t/4465:4467 | Isolated non-canonical cWW pair | homologous IL_5TBW_112 NA | |
| IL_6OLF_226 | 1/t/4499:4500, 1/t/4509:4511 | Single bulged A | geometric IL_7RQB_101 NA | |
| IL_6OLF_227 | 1/t/4542:4547, 1/t/4679:4685 | No text annotation | ||
| IL_6OLF_228 | 1/t/4552:4554, 1/t/4580:4582 | Isolated non-canonical cWW pair | homologous IL_8C3A_124 NA | |
| IL_6OLF_229 | 1/t/4558:4565, 1/t/4570:4576 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_8C3A_125 NA | |
| IL_6OLF_230 | 1/t/4586:4591, 1/t/4631:4635 | No text annotation | ||
| IL_6OLF_231 | 1/t/4594:4599, 1/t/4624:4628 | UAA/GAN related | geometric IL_5TBW_118 NA | |
| IL_6OLF_320 | 1/t/4600:4602, 1/t/4621:4623 | No text annotation | geometric IL_8P9A_384 IL_44465.1 | |
| IL_6OLF_233 | 1/t/4603:4604, 1/t/4617:4620 | Multiple bulged bases | homologous IL_5TBW_119 NA | |
| IL_6OLF_234 | 1/t/4642:4647, 1/t/4667:4672 | UAA/GAN with extra cWW | geometric IL_5J7L_350 IL_49767.8 | |
| IL_6OLF_235 | 1/t/4701:4704, 1/t/4916:4918 | No text annotation | ||
| IL_6OLF_236 | 1/t/4704:4708, 1/t/4911:4916 | No text annotation | ||
| IL_6OLF_305 | 1/t/4716:4733, 1/t/4819:4836 | No text annotation | ||
| IL_6OLF_237 | 1/t/4843:4847, 1/t/4888:4892 | Triple non-canonical cWW pairs | geometric IL_8S95_002 IL_49751.4 | |
| IL_6OLF_238 | 1/t/4849:4857, 1/t/4879:4886 | No text annotation | ||
| IL_6OLF_239 | 1/t/4857:4859, 1/t/4878:4879 | No text annotation | ||
| IL_6OLF_240 | 1/t/4930:4933, 1/t/4941:4944 | Tandem non-canonical cWW pairs | homologous IL_8C3A_135 NA | |
| IL_6OLF_241 | 1/t/4950:4952, 1/t/5015:5017 | Isolated non-canonical cWW pair | geometric IL_3IVK_002 IL_87907.2 | |
| IL_6OLF_242 | 1/t/4954:4955, 1/t/5011:5013 | Single bulged C | geometric IL_1KUQ_002 IL_61258.15 | |
| IL_6OLF_243 | 1/t/4958:4961, 1/t/5002:5008 | No text annotation | ||
| IL_6OLF_244 | 1/t/4961:4967, 1/t/4997:5002 | No text annotation | ||
| IL_6OLF_245 | 1/t/4970:4972, 1/t/4993:4994 | Single bulged C | geometric IL_7KGA_004 IL_61258.15 | |
| IL_6OLF_246 | 1/t/4972:4975, 1/t/4990:4993 | Double sheared; A in syn | homologous IL_8C3A_141 NA | |
| IL_6OLF_247 | 1/v/10:12, 1/v/24:25 | Single stack bend | geometric IL_4V9F_005 IL_90729.1 | |
| IL_6OLF_248 | 1/v/51:52, 1/v/62:64 | Single base bend | homologous IL_5IBB_340 IL_90729.1 | |
| IL_6OLF_249 | 1/v/53:55, 1/v/58:61 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_6OLF_251 | Isolated non-canonical cWW pair | ||
| IL_6OLF_252 | Isolated non-canonical cWW pair | ||
| IL_6OLF_253 | No text annotation | ||
| IL_6OLF_009 | No text annotation | ||
| IL_6OLF_254 | 9x8 Sarcin-Ricin with GA cWW pair; G-bulge | ||
| IL_6OLF_256 | Tandem non-canonical cWW pairs | ||
| IL_6OLF_015 | No text annotation | ||
| IL_6OLF_024 | No text annotation | ||
| IL_6OLF_025 | No text annotation | ||
| IL_6OLF_026 | No text annotation | ||
| IL_6OLF_027 | Tandem non-canonical cWW pairs | ||
| IL_6OLF_037 | No text annotation | ||
| IL_6OLF_049 | No text annotation | ||
| IL_6OLF_054 | Single bulged G, near cWW | ||
| IL_6OLF_264 | No text annotation | ||
| IL_6OLF_058 | No text annotation | ||
| IL_6OLF_265 | No text annotation | ||
| IL_6OLF_067 | Isolated non-canonical cWW with bulges | ||
| IL_6OLF_267 | No text annotation | ||
| IL_6OLF_268 | Non-canonical cWW with near cWH | ||
| IL_6OLF_077 | No text annotation | ||
| IL_6OLF_078 | Isolated non-canonical cWW pair | ||
| IL_6OLF_080 | Minor groove platform with extra cWW | ||
| IL_6OLF_095 | No text annotation | ||
| IL_6OLF_277 | Double sheared with near cWW | ||
| IL_6OLF_099 | Isolated non-canonical cWW pair | ||
| IL_6OLF_280 | No text annotation | ||
| IL_6OLF_281 | Partly complementary | ||
| IL_6OLF_282 | No text annotation | ||
| IL_6OLF_120 | No text annotation | ||
| IL_6OLF_125 | Isolated non-canonical cWW with bulges | ||
| IL_6OLF_130 | No text annotation | ||
| IL_6OLF_286 | No text annotation | ||
| IL_6OLF_287 | No text annotation | ||
| IL_6OLF_150 | No text annotation | ||
| IL_6OLF_290 | Isolated non-canonical cWW pair | ||
| IL_6OLF_158 | Major groove platform with extra cWW | ||
| IL_6OLF_162 | No text annotation | ||
| IL_6OLF_292 | No text annotation | ||
| IL_6OLF_164 | Tandem non-canonical cWW pairs | ||
| IL_6OLF_293 | No text annotation | ||
| IL_6OLF_181 | No text annotation | ||
| IL_6OLF_295 | No text annotation | ||
| IL_6OLF_296 | No text annotation | ||
| IL_6OLF_298 | No text annotation | ||
| IL_6OLF_213 | No text annotation | ||
| IL_6OLF_299 | No text annotation | ||
| IL_6OLF_217 | No text annotation | ||
| IL_6OLF_301 | No text annotation | ||
| IL_6OLF_302 | Tandem non-canonical cWW pairs | ||
| IL_6OLF_232 | Tandem non-canonical cWW pairs | ||
| IL_6OLF_303 | No text annotation | ||
| IL_6OLF_304 | No text annotation | ||
| IL_6OLF_306 | No text annotation | ||
| IL_6OLF_307 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_6OLF_001 | 1/D/19:20, 1/t/374:381, 1/t/408:409 | No text annotation | homologous J3_5TBW_002 NA | |
| J3_6OLF_032 | 1/D/19:20, 1/t/374:384, 1/t/395:409 | No text annotation | geometric J3_5TBW_062 NA | |
| J3_6OLF_033 | 1/D/21:24, 1/t/345:361, 1/t/368:373 | No text annotation | geometric J3_5TBW_061 NA | |
| J3_6OLF_049 | 1/D/44:45, 1/D/58:66, 1/D/92:99 | No text annotation | ||
| J3_6OLF_050 | 1/E/9:14, 1/E/65:66, 1/E/109:110 | No text annotation | homologous J3_8P9A_066 J3_12003.2 | |
| J3_6OLF_004 | 1/S2/40:41, 1/S2/481:489, 1/S2/511:514 | No text annotation | ||
| J3_6OLF_005 | 1/S2/682:685, 1/S2/917:922, 1/S2/1022:1023 | No text annotation | ||
| J3_6OLF_034 | 1/S2/682:685, 1/S2/917:923, 1/S2/1019:1023 | No text annotation | ||
| J3_6OLF_006 | 1/S2/816:819, 1/S2/829:831, 1/S2/843:848 | No text annotation | homologous J3_4V88_032 NA | |
| J3_6OLF_035 | 1/S2/816:820, 1/S2/828:831, 1/S2/843:848 | No text annotation | ||
| J3_6OLF_007 | 1/S2/938:941, 1/S2/985:993, 1/S2/1000:1004 | No text annotation | homologous J3_4V88_033 NA | |
| J3_6OLF_008 | 1/S2/1094:1096, 1/S2/1136:1140, 1/S2/1147:1151 | No text annotation | ||
| J3_6OLF_009 | 1/S2/1218:1221, 1/S2/1645:1651, 1/S2/1673:1680 | No text annotation | homologous J3_8P9A_076 J3_25303.4 | |
| J3_6OLF_010 | 1/S2/1225:1228, 1/S2/1530:1532, 1/S2/1638:1641 | No text annotation | homologous J3_8C3A_039 NA | |
| J3_6OLF_011 | 1/S2/1237:1244, 1/S2/1255:1266, 1/S2/1516:1520 | No text annotation | homologous J3_8C3A_040 NA | |
| J3_6OLF_012 | 1/S2/1272:1277, 1/S2/1320:1324, 1/S2/1504:1510 | No text annotation | homologous J3_4V88_038 NA | |
| J3_6OLF_013 | 1/S2/1339:1345, 1/S2/1384:1389, 1/S2/1481:1487 | No text annotation | geometric J3_8C3A_042 NA | |
| J3_6OLF_014 | 1/S2/1350:1351, 1/S2/1360:1363, 1/S2/1375:1379 | No text annotation | geometric J3_4V88_082 NA | |
| J3_6OLF_015 | 1/S2/1391:1395, 1/S2/1450:1456, 1/S2/1470:1479 | No text annotation | ||
| J3_6OLF_038 | 1/S2/1391:1399, 1/S2/1447:1456, 1/S2/1470:1479 | No text annotation | ||
| J3_6OLF_016 | 1/S2/1532:1536, 1/S2/1597:1604, 1/S2/1635:1638 | No text annotation | homologous J3_4V88_041 NA | |
| J3_6OLF_039 | 1/t/112:124, 1/t/143:158, 1/t/269:272 | No text annotation | ||
| J3_6OLF_040 | 1/t/188:218, 1/t/222:226, 1/t/235:245 | No text annotation | ||
| J3_6OLF_017 | 1/t/442:450, 1/t/692:696, 1/t/1275:1281 | No text annotation | ||
| J3_6OLF_018 | 1/t/1082:1087, 1/t/1148:1151, 1/t/1176:1179 | No text annotation | ||
| J3_6OLF_019 | 1/t/1513:1519, 1/t/1604:1606, 1/t/1622:1625 | No text annotation | homologous J3_5TBW_004 NA | |
| J3_6OLF_041 | 1/t/1527:1530, 1/t/1562:1566, 1/t/1591:1596 | No text annotation | homologous J3_8P9A_050 J3_21998.1 | |
| J3_6OLF_042 | 1/t/1708:1709, 1/t/1784:1789, 1/t/1813:1818 | No text annotation | ||
| J3_6OLF_021 | 1/t/1950:1952, 1/t/1976:1986, 1/t/1995:1999 | No text annotation | ||
| J3_6OLF_022 | 1/t/2372:2378, 1/t/2784:2786, 1/t/2798:2801 | No text annotation | homologous J3_5TBW_008 NA | |
| J3_6OLF_023 | 1/t/2381:2384, 1/t/2764:2770, 1/t/2779:2781 | No text annotation | homologous J3_8C3A_007 NA | |
| J3_6OLF_024 | 1/t/2419:2424, 1/t/2494:2498, 1/t/2515:2516 | No text annotation | homologous J3_5TBW_010 NA | |
| J3_6OLF_043 | 1/t/2430:2435, 1/t/2444:2455, 1/t/2480:2487 | No text annotation | homologous J3_8CRE_016 J3_65403.1 | |
| J3_6OLF_025 | 1/t/2530:2534, 1/t/2551:2554, 1/t/2736:2746 | No text annotation | ||
| J3_6OLF_026 | 1/t/2554:2555, 1/t/2564:2568, 1/t/2735:2736 | No text annotation | homologous J3_8C3A_054 NA | |
| J3_6OLF_044 | 1/t/2554:2556, 1/t/2563:2568, 1/t/2735:2736 | No text annotation | homologous J3_8P9A_057 NA | |
| J3_6OLF_045 | 1/t/2577:2581, 1/t/2716:2717, 1/t/2721:2726 | No text annotation | homologous J3_8P9A_058 J3_12393.2 | |
| J3_6OLF_027 | 1/t/3908:3910, 1/t/4044:4048, 1/t/4130:4135 | No text annotation | geometric J3_8VTW_006 NA | |
| J3_6OLF_028 | 1/t/4061:4064, 1/t/4083:4098, 1/t/4117:4120 | No text annotation | homologous J3_8C3A_009 NA | |
| J3_6OLF_047 | 1/t/4190:4192, 1/t/4293:4304, 1/t/4332:4337 | No text annotation | homologous J3_8C3A_056 NA | |
| J3_6OLF_029 | 1/t/4203:4205, 1/t/4229:4231, 1/t/4240:4245 | No text annotation | homologous J3_8C3A_010 NA | |
| J3_6OLF_030 | 1/t/4425:4428, 1/t/4453:4455, 1/t/4469:4475 | No text annotation | homologous J3_8C3A_011 NA | |
| J3_6OLF_048 | 1/t/4710:4716, 1/t/4836:4841, 1/t/4894:4909 | No text annotation | ||
| J3_6OLF_031 | 1/t/4928:4930, 1/t/4944:4950, 1/t/5017:5021 | No text annotation | ||
| J4_6OLF_001 | 1/S2/98:106, 1/S2/355:357, 1/S2/405:409, 1/S2/431:432 | No text annotation | homologous J4_8P9A_021 J4_15241.1 | |
| J4_6OLF_002 | 1/S2/671:673, 1/S2/1032:1037, 1/S2/1078:1089, 1/S2/1160:1161 | No text annotation | homologous J4_8P9A_022 J4_61885.6 | |
| J4_6OLF_003 | 1/S2/685:746, 1/S2/796:801, 1/S2/864:874, 1/S2/912:917 | No text annotation | ||
| J4_6OLF_004 | 1/t/111:112, 1/t/272:277, 1/t/298:304, 1/t/321:324 | No text annotation | homologous J4_8P9A_012 J4_45801.6 | |
| J4_6OLF_016 | 1/t/2344:2350, 1/t/2368:2370, 1/t/2803:2808, 1/t/3827:3828 | No text annotation | ||
| J4_6OLF_006 | 1/t/2385:2389, 1/t/2413:2418, 1/t/2517:2518, 1/t/2756:2763 | No text annotation | ||
| J4_6OLF_007 | 1/t/2388:2389, 1/t/2413:2418, 1/t/2517:2518, 1/t/2756:2762 | No text annotation | ||
| J4_6OLF_008 | 1/t/2597:2598, 1/t/2616:2621, 1/t/2671:2677, 1/t/2697:2698 | No text annotation | ||
| J4_6OLF_009 | 1/t/2834:2842, 1/t/2866:2867, 1/t/3584:3597, 1/t/3806:3808 | No text annotation | ||
| J4_6OLF_010 | 1/t/3605:3609, 1/t/3621:3625, 1/t/3661:3665, 1/t/3792:3797 | No text annotation | homologous J4_8P9A_017 J4_07509.2 | |
| J4_6OLF_017 | 1/t/3667:3669, 1/t/3723:3724, 1/t/3742:3751, 1/t/3785:3790 | No text annotation | homologous J4_8P9A_018 J4_93343.1 | |
| J4_6OLF_018 | 1/t/4193:4197, 1/t/4251:4255, 1/t/4279:4281, 1/t/4290:4292 | No text annotation | homologous J4_8P9A_019 J4_04930.6 | |
| J4_6OLF_013 | 1/t/4549:4552, 1/t/4582:4583, 1/t/4638:4640, 1/t/4674:4677 | No text annotation | ||
| J4_6OLF_014 | 1/u/7:10, 1/u/25:28, 1/u/42:49, 1/u/65:66 | tRNA junction | homologous J4_4V90_004 J4_94519.1 | |
| J4_6OLF_019 | 1/v/7:10, 1/v/25:27, 1/v/43:50, 1/v/65:67 | No text annotation | ||
| J5_6OLF_001 | 1/S2/30:34, 1/S2/521:534, 1/S2/549:563, 1/S2/592:595, 1/S2/641:644 | No text annotation | ||
| J5_6OLF_002 | 1/S2/30:34, 1/S2/521:534, 1/S2/549:565, 1/S2/585:595, 1/S2/641:644 | No text annotation | ||
| J5_6OLF_003 | 1/S2/52:56, 1/S2/89:96, 1/S2/434:436, 1/S2/457:461, 1/S2/468:475 | No text annotation | ||
| J5_6OLF_009 | 1/S2/123:129, 1/S2/183:185, 1/S2/214:215, 1/S2/310:312, 1/S2/337:341 | No text annotation | ||
| J5_6OLF_005 | 1/t/702:704, 1/t/942:970, 1/t/1053:1059, 1/t/1218:1230, 1/t/1245:1268 | No text annotation | ||
| J5_6OLF_006 | 1/t/1318:1323, 1/t/1498:1501, 1/t/1640:1643, 1/t/2267:2269, 1/t/2324:2330 | No text annotation | homologous J5_8C3A_002 NA | |
| J5_6OLF_010 | 1/t/3874:3881, 1/t/4354:4362, 1/t/4406:4416, 1/t/4488:4496, 1/t/4514:4519 | No text annotation | ||
| J5_6OLF_008 | 1/t/3891:3894, 1/t/4150:4153, 1/t/4166:4167, 1/t/4189:4190, 1/t/4337:4343 | No text annotation | homologous J5_8C3A_006 NA | |
| J6_6OLF_001 | 1/t/1335:1338, 1/t/1367:1371, 1/t/1378:1382, 1/t/1401:1404, 1/t/1446:1448, 1/t/1481:1486 | No text annotation | ||
| J6_6OLF_002 | 1/t/3891:3894, 1/t/4150:4153, 1/t/4166:4167, 1/t/4189:4192, 1/t/4293:4304, 1/t/4332:4343 | No text annotation | ||
| J7_6OLF_001 | 1/t/1648:1653, 1/t/1666:1667, 1/t/1833:1836, 1/t/1860:1865, 1/t/1876:1880, 1/t/2058:2059, 1/t/2257:2262 | No text annotation | ||
| J9_6OLF_002 | 1/D/33:42, 1/D/101:106, 1/D/113:114, 1/D/136:138, 1/t/19:27, 1/t/55:67, 1/t/74:78, 1/t/105:109, 1/t/326:333 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_6OLF_002 | No text annotation | ||
| J3_6OLF_003 | No text annotation | ||
| J3_6OLF_036 | No text annotation | ||
| J3_6OLF_037 | No text annotation | ||
| J3_6OLF_020 | No text annotation | ||
| J3_6OLF_046 | No text annotation | ||
| J4_6OLF_005 | No text annotation | ||
| J4_6OLF_011 | No text annotation | ||
| J4_6OLF_012 | No text annotation | ||
| J4_6OLF_015 | No text annotation | ||
| J5_6OLF_004 | No text annotation | ||
| J5_6OLF_007 | No text annotation | ||
| J9_6OLF_001 | No text annotation |
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