HL_6OLF_023

3D structure

PDB id

6OLF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human ribosome nascent chain complex (CDH1-RNC) stalled by a drug-like molecule with AA and PE tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GCCCGAGCCGC

Length

11 nucleotides

Bulged bases

6OLF|1|S2|C|840

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6OLF_023 not in the Motif Atlas

Geometric match to HL_8KAL_003

Geometric discrepancy: 0.2423

The information below is about HL_8KAL_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

6OLF|1|S2|G|832
6OLF|1|S2|C|833
6OLF|1|S2|C|834
6OLF|1|S2|C|835
6OLF|1|S2|G|836
6OLF|1|S2|A|837
6OLF|1|S2|G|838
6OLF|1|S2|C|839
6OLF|1|S2|C|840
6OLF|1|S2|G|841
6OLF|1|S2|C|842

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain SE

40S ribosomal protein S4, X isoform

Chain SJ

40S ribosomal protein S9

Chain SY

40S ribosomal protein S24