HL_6OLF_079

3D structure

PDB id

6OLF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human ribosome nascent chain complex (CDH1-RNC) stalled by a drug-like molecule with AA and PE tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CGAGCG

Length

6 nucleotides

Bulged bases

6OLF|1|t|C|2441

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6OLF_079 not in the Motif Atlas

Homologous match to HL_8C3A_033

Geometric discrepancy: 0.2101

The information below is about HL_8C3A_033

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

6OLF|1|t|C|2437
6OLF|1|t|G|2438
6OLF|1|t|A|2439
6OLF|1|t|G|2440
6OLF|1|t|C|2441
6OLF|1|t|G|2442

Current chains

Chain t

28S ribosomal RNA

Nearby chains

Chain O

60S ribosomal protein L15

Chain k

60S ribosomal protein L37