HL_6OLF_086

3D structure

PDB id

6OLF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human ribosome nascent chain complex (CDH1-RNC) stalled by a drug-like molecule with AA and PE tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GGUUCC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6OLF_086 not in the Motif Atlas

Geometric match to HL_4V9F_011

Geometric discrepancy: 0.17

The information below is about HL_4V9F_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

6OLF|1|t|G|2684
6OLF|1|t|G|2685
6OLF|1|t|U|2686
6OLF|1|t|U|2687
6OLF|1|t|C|2688
6OLF|1|t|C|2689

Current chains

Chain t

28S ribosomal RNA

Nearby chains

Chain S

60S ribosomal protein L19

Chain Y

60S ribosomal protein L23a