3D structure

PDB id
6OLF (explore in PDB, NAKB, or RNA 3D Hub)
Description
Human ribosome nascent chain complex (CDH1-RNC) stalled by a drug-like molecule with AA and PE tRNAs
Experimental method
ELECTRON MICROSCOPY
Resolution
3.9 Å

Loop

Sequence
CGAGG
Length
5 nucleotides
Bulged bases
6OLF|1|t|A|4074, 6OLF|1|t|G|4075
QA status
Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6OLF_099 not in the Motif Atlas
Geometric match to HL_4YAZ_004
Geometric discrepancy: 0.2932
The information below is about HL_4YAZ_004
Detailed Annotation
Mini UNCG
Broad Annotation
No text annotation
Motif group
HL_90436.1
Basepair signature
cWW-F
Number of instances in this motif group
37

Unit IDs

6OLF|1|t|C|4072
6OLF|1|t|G|4073
6OLF|1|t|A|4074
6OLF|1|t|G|4075
6OLF|1|t|G|4076

Current chains

Chain t
28S ribosomal RNA

Nearby chains

Chain SB
40S ribosomal protein S3a

Coloring options:


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