HL_6OLF_099

3D structure

PDB id

6OLF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human ribosome nascent chain complex (CDH1-RNC) stalled by a drug-like molecule with AA and PE tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CGAGG

Length

5 nucleotides

Bulged bases

6OLF|1|t|A|4074, 6OLF|1|t|G|4075

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6OLF_099 not in the Motif Atlas

Geometric match to HL_4YAZ_004

Geometric discrepancy: 0.2932

The information below is about HL_4YAZ_004

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_90436.2

Basepair signature

cWW-F

Number of instances in this motif group

46

Unit IDs

6OLF|1|t|C|4072
6OLF|1|t|G|4073
6OLF|1|t|A|4074
6OLF|1|t|G|4075
6OLF|1|t|G|4076

Current chains

Chain t

28S ribosomal RNA

Nearby chains

Chain SB

40S ribosomal protein S3a