HL_6OLF_114

3D structure

PDB id

6OLF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human ribosome nascent chain complex (CDH1-RNC) stalled by a drug-like molecule with AA and PE tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CUGAACGCCUCUAAG

Length

15 nucleotides

Bulged bases

6OLF|1|t|G|4656

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6OLF_114 not in the Motif Atlas

Homologous match to HL_8C3A_068

Geometric discrepancy: 0.1263

The information below is about HL_8C3A_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56677.9

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

6OLF|1|t|C|4650
6OLF|1|t|U|4651
6OLF|1|t|G|4652
6OLF|1|t|A|4653
6OLF|1|t|A|4654
6OLF|1|t|C|4655
6OLF|1|t|G|4656
6OLF|1|t|C|4657
6OLF|1|t|C|4658
6OLF|1|t|U|4659
6OLF|1|t|C|4660
6OLF|1|t|U|4661
6OLF|1|t|A|4662
6OLF|1|t|A|4663
6OLF|1|t|G|4664

Current chains

Chain t

28S ribosomal RNA

Nearby chains

Chain J

60S ribosomal protein L9

Chain P

60S ribosomal protein L13a

Chain n

60S ribosomal protein L40