HL_6OLF_116

3D structure

PDB id

6OLF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human ribosome nascent chain complex (CDH1-RNC) stalled by a drug-like molecule with AA and PE tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GGAAAGGC

Length

8 nucleotides

Bulged bases

6OLF|1|t|A|4868, 6OLF|1|t|A|4869

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6OLF_116 not in the Motif Atlas

Geometric match to HL_4WF9_003

Geometric discrepancy: 0.1414

The information below is about HL_4WF9_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.6

Basepair signature

cWW-F

Number of instances in this motif group

21

Unit IDs

6OLF|1|t|G|4865
6OLF|1|t|G|4866
6OLF|1|t|A|4867
6OLF|1|t|A|4868
6OLF|1|t|A|4869
6OLF|1|t|G|4870
6OLF|1|t|G|4871
6OLF|1|t|C|4872

Current chains

Chain t

28S ribosomal RNA

Nearby chains

Chain B

60S ribosomal protein L3

Chain P

60S ribosomal protein L13a