HL_6OLF_117

3D structure

PDB id

6OLF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human ribosome nascent chain complex (CDH1-RNC) stalled by a drug-like molecule with AA and PE tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GUAGACGAC

Length

9 nucleotides

Bulged bases

6OLF|1|t|U|4934

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6OLF_117 not in the Motif Atlas

Geometric match to HL_5TBW_070

Geometric discrepancy: 0.1934

The information below is about HL_5TBW_070

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64690.4

Basepair signature

cWW-cSW-F-F-F-cWW

Number of instances in this motif group

9

Unit IDs

6OLF|1|t|G|4933
6OLF|1|t|U|4934
6OLF|1|t|A|4935
6OLF|1|t|G|4936
6OLF|1|t|A|4937
6OLF|1|t|C|4938
6OLF|1|t|G|4939
6OLF|1|t|A|4940
6OLF|1|t|C|4941

Current chains

Chain t

28S ribosomal RNA

Nearby chains

Chain B

60S ribosomal protein L3

Chain Q

60S ribosomal protein L17

Chain e

60S ribosomal protein L31