HL_6OLF_120
3D structure
- PDB id
- 6OLF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human ribosome nascent chain complex (CDH1-RNC) stalled by a drug-like molecule with AA and PE tRNAs
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- AUUCCGUAU
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6OLF_120 not in the Motif Atlas
- Homologous match to HL_5IBB_210
- Geometric discrepancy: 0.2015
- The information below is about HL_5IBB_210
- Detailed Annotation
- tRNA anticodon loop
- Broad Annotation
- Anticodon loop
- Motif group
- HL_06059.7
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 51
Unit IDs
6OLF|1|u|A|31
6OLF|1|u|U|32
6OLF|1|u|U|33
6OLF|1|u|C|34
6OLF|1|u|C|35
6OLF|1|u|G|36
6OLF|1|u|U|37
6OLF|1|u|A|38
6OLF|1|u|U|39
Current chains
- Chain u
- PE tRNA
Nearby chains
- Chain S2
- Small subunit ribosomal RNA; SSU rRNA
- Chain SP
- 40S ribosomal protein S15
- Chain SX
- 40S ribosomal protein S23
- Chain Se
- 40S ribosomal protein S30
- Chain t
- Large subunit ribosomal RNA; LSU rRNA
- Chain w
- mRNA
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