HL_6OLF_134

3D structure

PDB id

6OLF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human ribosome nascent chain complex (CDH1-RNC) stalled by a drug-like molecule with AA and PE tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

AAGCAGAAUU

Length

10 nucleotides

Bulged bases

6OLF|1|t|G|4437

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6OLF_134 not in the Motif Atlas

Geometric match to HL_3W3S_002

Geometric discrepancy: 0.3489

The information below is about HL_3W3S_002

Detailed Annotation

tRNA anticodon loop

Broad Annotation

Anticodon loop

Motif group

HL_81376.2

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

42

Unit IDs

6OLF|1|t|A|4435
6OLF|1|t|A|4436
6OLF|1|t|G|4437
6OLF|1|t|C|4438
6OLF|1|t|A|4439
6OLF|1|t|G|4440
6OLF|1|t|A|4441
6OLF|1|t|A|4442
6OLF|1|t|U|4443
6OLF|1|t|U|4444

Current chains

Chain t

28S ribosomal RNA

Nearby chains

Chain J

60S ribosomal protein L9

Chain n

60S ribosomal protein L40