HL_6OLF_139

3D structure

PDB id

6OLF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human ribosome nascent chain complex (CDH1-RNC) stalled by a drug-like molecule with AA and PE tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UCUUGAAACA

Length

10 nucleotides

Bulged bases

6OLF|1|t|C|1308

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6OLF_139 not in the Motif Atlas

Homologous match to HL_8P9A_126

Geometric discrepancy: 0.1746

The information below is about HL_8P9A_126

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_28252.9

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

141

Unit IDs

6OLF|1|t|U|1300
6OLF|1|t|C|1301
6OLF|1|t|U|1302
6OLF|1|t|U|1303
6OLF|1|t|G|1304
6OLF|1|t|A|1305
6OLF|1|t|A|1306
6OLF|1|t|A|1307
6OLF|1|t|C|1308
6OLF|1|t|A|1309

Current chains

Chain t

28S ribosomal RNA

Nearby chains

Chain B

60S ribosomal protein L3

Chain b

60S ribosomal protein L27a

Chain f

60S ribosomal protein L32