HL_6OLG_007

3D structure

PDB id

6OLG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human ribosome nascent chain complex stalled by a drug-like small molecule (CDH1_RNC with PP tRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CUUGGGAAUG

Length

10 nucleotides

Bulged bases

6OLG|1|A2|A|289, 6OLG|1|A2|A|290

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6OLG_007 not in the Motif Atlas

Homologous match to HL_8C3A_008

Geometric discrepancy: 0.2031

The information below is about HL_8C3A_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_77436.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

6OLG|1|A2|C|283
6OLG|1|A2|U|284
6OLG|1|A2|U|285
6OLG|1|A2|G|286
6OLG|1|A2|G|287
6OLG|1|A2|G|288
6OLG|1|A2|A|289
6OLG|1|A2|A|290
6OLG|1|A2|U|291
6OLG|1|A2|G|292

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain AL

60S ribosomal protein L13

Chain AN

60S ribosomal protein L15

Chain Aa

60S ribosomal protein L27a

Chain Ao

60S ribosomal protein L36a