HL_6OLG_016

3D structure

PDB id

6OLG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human ribosome nascent chain complex stalled by a drug-like small molecule (CDH1_RNC with PP tRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UCUUGAAACA

Length

10 nucleotides

Bulged bases

6OLG|1|A2|C|1308

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6OLG_016 not in the Motif Atlas

Homologous match to HL_5TBW_014

Geometric discrepancy: 0.1399

The information below is about HL_5TBW_014

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_43993.1

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

141

Unit IDs

6OLG|1|A2|U|1300
6OLG|1|A2|C|1301
6OLG|1|A2|U|1302
6OLG|1|A2|U|1303
6OLG|1|A2|G|1304
6OLG|1|A2|A|1305
6OLG|1|A2|A|1306
6OLG|1|A2|A|1307
6OLG|1|A2|C|1308
6OLG|1|A2|A|1309

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain AB

60S ribosomal protein L3

Chain Aa

60S ribosomal protein L27a

Chain Ae

60S ribosomal protein L32