HL_6OLG_025

3D structure

PDB id

6OLG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human ribosome nascent chain complex stalled by a drug-like small molecule (CDH1_RNC with PP tRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CCUCAG

Length

6 nucleotides

Bulged bases

6OLG|1|A2|C|1658, 6OLG|1|A2|A|1661

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6OLG_025 not in the Motif Atlas

Homologous match to HL_8C3A_022

Geometric discrepancy: 0.2695

The information below is about HL_8C3A_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

6OLG|1|A2|C|1657
6OLG|1|A2|C|1658
6OLG|1|A2|U|1659
6OLG|1|A2|C|1660
6OLG|1|A2|A|1661
6OLG|1|A2|G|1662

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain Aa

60S ribosomal protein L27a

Chain Ab

60S ribosomal protein L29

Chain Ao

60S ribosomal protein L36a