HL_6OLG_029

3D structure

PDB id

6OLG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human ribosome nascent chain complex stalled by a drug-like small molecule (CDH1_RNC with PP tRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GGAUGAAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6OLG_029 not in the Motif Atlas

Homologous match to HL_8C3A_026

Geometric discrepancy: 0.2324

The information below is about HL_8C3A_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_44398.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

6OLG|1|A2|G|1867
6OLG|1|A2|G|1868
6OLG|1|A2|A|1869
6OLG|1|A2|U|1870
6OLG|1|A2|G|1871
6OLG|1|A2|A|1872
6OLG|1|A2|A|1873
6OLG|1|A2|C|1874

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain A4

5S ribosomal RNA; 5S rRNA

Chain Ae

60S ribosomal protein L32

Chain Af

60S ribosomal protein L35a