HL_8C3A_026

3D structure

PDB id

8C3A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of ailanthone bound to the Candida albicans 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GGAUGAAC

Length

8 nucleotides

Bulged bases (A, C, G, U)

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64430.3

Basepair signature

cWW-F-F

Number of instances in this motif group

13

Unit IDs

8C3A|1|1|G|1144
8C3A|1|1|G|1145
8C3A|1|1|A|1146
8C3A|1|1|U|1147
8C3A|1|1|G|1148
8C3A|1|1|A|1149
8C3A|1|1|A|1150
8C3A|1|1|C|1151

Current chains

Chain 1

25S

Nearby chains

Chain 3

5S ribosomal RNA; 5S rRNA

Chain AF

60S ribosomal protein L32

Chain AG

60S ribosomal protein L33-A

Chain o

60S ribosomal protein L7-A