HL_6OLG_034

3D structure

PDB id

6OLG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human ribosome nascent chain complex stalled by a drug-like small molecule (CDH1_RNC with PP tRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

ACGAGAACU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6OLG_034 not in the Motif Atlas

Homologous match to HL_5TBW_031

Geometric discrepancy: 0.2178

The information below is about HL_5TBW_031

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_43993.1

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

141

Unit IDs

6OLG|1|A2|A|2355
6OLG|1|A2|C|2356
6OLG|1|A2|G|2357
6OLG|1|A2|A|2358
6OLG|1|A2|G|2359
6OLG|1|A2|A|2360
6OLG|1|A2|A|2361
6OLG|1|A2|C|2362
6OLG|1|A2|U|2363

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain AP

60S ribosomal protein L17

Chain AR

60S ribosomal protein L19

Chain Ad

60S ribosomal protein L31