HL_6OLG_035

3D structure

PDB id

6OLG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human ribosome nascent chain complex stalled by a drug-like small molecule (CDH1_RNC with PP tRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

AGCAGUU

Length

7 nucleotides

Bulged bases

6OLG|1|A2|G|2400, 6OLG|1|A2|U|2404

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6OLG_035 not in the Motif Atlas

Homologous match to HL_8C3A_032

Geometric discrepancy: 0.238

The information below is about HL_8C3A_032

Detailed Annotation

Pseudoknot geometry with 3' bulge

Broad Annotation

No text annotation

Motif group

HL_40756.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

14

Unit IDs

6OLG|1|A2|A|2399
6OLG|1|A2|G|2400
6OLG|1|A2|C|2401
6OLG|1|A2|A|2402
6OLG|1|A2|G|2403
6OLG|1|A2|U|2404
6OLG|1|A2|U|2405

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain A

Cadherin-1

Chain AP

60S ribosomal protein L17

Chain AR

60S ribosomal protein L19