HL_6OLG_053

3D structure

PDB id

6OLG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human ribosome nascent chain complex stalled by a drug-like small molecule (CDH1_RNC with PP tRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GUAACUAUGAC

Length

11 nucleotides

Bulged bases

6OLG|1|A2|A|3731

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6OLG_053 not in the Motif Atlas

Homologous match to HL_5TBW_049

Geometric discrepancy: 0.3232

The information below is about HL_5TBW_049

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_84702.1

Basepair signature

cWW-F-F-tHW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

6OLG|1|A2|G|3728
6OLG|1|A2|U|3729
6OLG|1|A2|A|3730
6OLG|1|A2|A|3731
6OLG|1|A2|C|3732
6OLG|1|A2|U|3733
6OLG|1|A2|A|3734
6OLG|1|A2|U|3735
6OLG|1|A2|G|3736
6OLG|1|A2|A|3737
6OLG|1|A2|C|3738

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain B1

Small subunit ribosomal RNA; SSU rRNA

Chain Bv

Transfer RNA; tRNA