HL_6OLG_065

3D structure

PDB id

6OLG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human ribosome nascent chain complex stalled by a drug-like small molecule (CDH1_RNC with PP tRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CGUUCAUAG

Length

9 nucleotides

Bulged bases

6OLG|1|A2|U|4381

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6OLG_065 not in the Motif Atlas

Homologous match to HL_5TBW_061

Geometric discrepancy: 0.159

The information below is about HL_5TBW_061

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_82661.1

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

6OLG|1|A2|C|4379
6OLG|1|A2|G|4380
6OLG|1|A2|U|4381
6OLG|1|A2|U|4382
6OLG|1|A2|C|4383
6OLG|1|A2|A|4384
6OLG|1|A2|U|4385
6OLG|1|A2|A|4386
6OLG|1|A2|G|4387

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain AI

60S ribosomal protein L10

Chain Am

60S ribosomal protein L40