HL_6OLG_066

3D structure

PDB id

6OLG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human ribosome nascent chain complex stalled by a drug-like small molecule (CDH1_RNC with PP tRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

AGCAGAAU

Length

8 nucleotides

Bulged bases

6OLG|1|A2|G|4437

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6OLG_066 not in the Motif Atlas

Homologous match to HL_5TBW_062

Geometric discrepancy: 0.1196

The information below is about HL_5TBW_062

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_79150.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

12

Unit IDs

6OLG|1|A2|A|4436
6OLG|1|A2|G|4437
6OLG|1|A2|C|4438
6OLG|1|A2|A|4439
6OLG|1|A2|G|4440
6OLG|1|A2|A|4441
6OLG|1|A2|A|4442
6OLG|1|A2|U|4443

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain AH

60S ribosomal protein L9

Chain Am

60S ribosomal protein L40