HL_6OLG_070

3D structure

PDB id

6OLG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human ribosome nascent chain complex stalled by a drug-like small molecule (CDH1_RNC with PP tRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UGAGGA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6OLG_070 not in the Motif Atlas

Homologous match to HL_8C3A_067

Geometric discrepancy: 0.1913

The information below is about HL_8C3A_067

Detailed Annotation

Ribsomal LSU H95

Broad Annotation

Ribsomal LSU H95

Motif group

HL_65794.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

11

Unit IDs

6OLG|1|A2|U|4608
6OLG|1|A2|G|4609
6OLG|1|A2|A|4610
6OLG|1|A2|G|4611
6OLG|1|A2|G|4612
6OLG|1|A2|A|4613

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain AR

60S ribosomal protein L19

Chain AU

60S ribosomal protein L22

Chain Ad

60S ribosomal protein L31