HL_6OLG_083

3D structure

PDB id

6OLG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human ribosome nascent chain complex stalled by a drug-like small molecule (CDH1_RNC with PP tRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GUAAUUC

Length

7 nucleotides

Bulged bases

6OLG|1|B1|U|160, 6OLG|1|B1|U|161

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6OLG_083 not in the Motif Atlas

Homologous match to HL_4V88_188

Geometric discrepancy: 0.3035

The information below is about HL_4V88_188

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

6OLG|1|B1|G|156
6OLG|1|B1|U|157
6OLG|1|B1|A|158
6OLG|1|B1|A|159
6OLG|1|B1|U|160
6OLG|1|B1|U|161
6OLG|1|B1|C|162

Current chains

Chain B1

18S ribosomal RNA

Nearby chains

Chain BG

40S ribosomal protein S6

Chain BY

40S ribosomal protein S24