HL_6OLG_088

3D structure

PDB id

6OLG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human ribosome nascent chain complex stalled by a drug-like small molecule (CDH1_RNC with PP tRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GUCGCCGUGCC

Length

11 nucleotides

Bulged bases

6OLG|1|B1|G|385

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6OLG_088 not in the Motif Atlas

Geometric match to HL_8GLP_091

Geometric discrepancy: 0.1282

The information below is about HL_8GLP_091

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50525.1

Basepair signature

cWW-cWW-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

6OLG|1|B1|G|377
6OLG|1|B1|U|378
6OLG|1|B1|C|379
6OLG|1|B1|G|380
6OLG|1|B1|C|381
6OLG|1|B1|C|382
6OLG|1|B1|G|383
6OLG|1|B1|U|384
6OLG|1|B1|G|385
6OLG|1|B1|C|386
6OLG|1|B1|C|387

Current chains

Chain B1

18S ribosomal RNA

Nearby chains

Chain BI

40S ribosomal protein S8

Chain BL

40S ribosomal protein S11