HL_6OLG_100

3D structure

PDB id

6OLG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human ribosome nascent chain complex stalled by a drug-like small molecule (CDH1_RNC with PP tRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UAUUUUGUUGGUUUUCG

Length

17 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6OLG_100 not in the Motif Atlas

Homologous match to HL_8C3A_210

Geometric discrepancy: 0.4693

The information below is about HL_8C3A_210

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_08554.1

Basepair signature

cWW-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

6OLG|1|B1|U|885
6OLG|1|B1|A|886
6OLG|1|B1|U|887
6OLG|1|B1|U|888
6OLG|1|B1|U|889
6OLG|1|B1|U|890
6OLG|1|B1|G|891
6OLG|1|B1|U|892
6OLG|1|B1|U|893
6OLG|1|B1|G|894
6OLG|1|B1|G|895
6OLG|1|B1|U|896
6OLG|1|B1|U|897
6OLG|1|B1|U|898
6OLG|1|B1|U|899
6OLG|1|B1|C|900
6OLG|1|B1|G|901

Current chains

Chain B1

18S ribosomal RNA

Nearby chains

Chain BL

40S ribosomal protein S11