HL_6OLG_112

3D structure

PDB id

6OLG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human ribosome nascent chain complex stalled by a drug-like small molecule (CDH1_RNC with PP tRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CGUUCAG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6OLG_112 not in the Motif Atlas

Geometric match to HL_5J7L_179

Geometric discrepancy: 0.2676

The information below is about HL_5J7L_179

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_04783.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

9

Unit IDs

6OLG|1|B1|C|1460
6OLG|1|B1|G|1461
6OLG|1|B1|U|1462
6OLG|1|B1|U|1463
6OLG|1|B1|C|1464
6OLG|1|B1|A|1465
6OLG|1|B1|G|1466

Current chains

Chain B1

18S ribosomal RNA

Nearby chains

Chain BR

40S ribosomal protein S17