HL_6OLG_121

3D structure

PDB id

6OLG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human ribosome nascent chain complex stalled by a drug-like small molecule (CDH1_RNC with PP tRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GGUAAUUCU

Length

9 nucleotides

Bulged bases

6OLG|1|B1|U|161

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6OLG_121 not in the Motif Atlas

Geometric match to HL_8KAL_001

Geometric discrepancy: 0.3789

The information below is about HL_8KAL_001

Detailed Annotation

GNRA with extra cWW

Broad Annotation

GNRA with extra cWW

Motif group

HL_87268.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

16

Unit IDs

6OLG|1|B1|G|155
6OLG|1|B1|G|156
6OLG|1|B1|U|157
6OLG|1|B1|A|158
6OLG|1|B1|A|159
6OLG|1|B1|U|160
6OLG|1|B1|U|161
6OLG|1|B1|C|162
6OLG|1|B1|U|163

Current chains

Chain B1

18S ribosomal RNA

Nearby chains

Chain BG

40S ribosomal protein S6

Chain BY

40S ribosomal protein S24