HL_6OLI_004

3D structure

PDB id

6OLI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of human ribosome nascent chain complex selectively stalled by a drug-like small molecule (USO1-RNC)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GGGUUCCUCCC

Length

11 nucleotides

Bulged bases

6OLI|1|D|U|124, 6OLI|1|D|C|128

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6OLI_004 not in the Motif Atlas

Geometric match to HL_5TBW_006

Geometric discrepancy: 0.1765

The information below is about HL_5TBW_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

6OLI|1|D|G|120
6OLI|1|D|G|121
6OLI|1|D|G|122
6OLI|1|D|U|123
6OLI|1|D|U|124
6OLI|1|D|C|125
6OLI|1|D|C|126
6OLI|1|D|U|127
6OLI|1|D|C|128
6OLI|1|D|C|129
6OLI|1|D|C|130

Current chains

Chain D

5.8S ribosomal RNA

Nearby chains

Chain Y

60S ribosomal protein L23a

Chain t

Large subunit ribosomal RNA; LSU rRNA