HL_6OLI_018

3D structure

PDB id

6OLI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of human ribosome nascent chain complex selectively stalled by a drug-like small molecule (USO1-RNC)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UCUUUCG

Length

7 nucleotides

Bulged bases

6OLI|1|S2|U|540, 6OLI|1|S2|U|542

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6OLI_018 not in the Motif Atlas

Geometric match to HL_5TBW_006

Geometric discrepancy: 0.3113

The information below is about HL_5TBW_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

6OLI|1|S2|U|538
6OLI|1|S2|C|539
6OLI|1|S2|U|540
6OLI|1|S2|U|541
6OLI|1|S2|U|542
6OLI|1|S2|C|543
6OLI|1|S2|G|544

Current chains

Chain S2

18S ribosomal RNA

Nearby chains