HL_6OLI_058

3D structure

PDB id

6OLI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of human ribosome nascent chain complex selectively stalled by a drug-like small molecule (USO1-RNC)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UCUUGAAACA

Length

10 nucleotides

Bulged bases

6OLI|1|t|C|1308

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6OLI_058 not in the Motif Atlas

Homologous match to HL_5TBW_014

Geometric discrepancy: 0.0994

The information below is about HL_5TBW_014

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_43993.1

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

141

Unit IDs

6OLI|1|t|U|1300
6OLI|1|t|C|1301
6OLI|1|t|U|1302
6OLI|1|t|U|1303
6OLI|1|t|G|1304
6OLI|1|t|A|1305
6OLI|1|t|A|1306
6OLI|1|t|A|1307
6OLI|1|t|C|1308
6OLI|1|t|A|1309

Current chains

Chain t

28S ribosomal RNA

Nearby chains

Chain B

60S ribosomal protein L3

Chain b

60S ribosomal protein L27a

Chain f

60S ribosomal protein L32