HL_6OLI_063

3D structure

PDB id

6OLI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of human ribosome nascent chain complex selectively stalled by a drug-like small molecule (USO1-RNC)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GCCGCGCC

Length

8 nucleotides

Bulged bases

6OLI|1|t|C|1467

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6OLI_063 not in the Motif Atlas

Geometric match to HL_6VMY_004

Geometric discrepancy: 0.3348

The information below is about HL_6VMY_004

Detailed Annotation

UNCG variation

Broad Annotation

UNCG variation

Motif group

HL_51020.2

Basepair signature

cWW-cSW-F

Number of instances in this motif group

14

Unit IDs

6OLI|1|t|G|1461
6OLI|1|t|C|1462
6OLI|1|t|C|1463
6OLI|1|t|G|1464
6OLI|1|t|C|1465
6OLI|1|t|G|1466
6OLI|1|t|C|1467
6OLI|1|t|C|1468

Current chains

Chain t

28S ribosomal RNA

Nearby chains

Chain M

60S ribosomal protein L13

Chain j

60S ribosomal protein L36