HL_6OLI_079

3D structure

PDB id

6OLI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of human ribosome nascent chain complex selectively stalled by a drug-like small molecule (USO1-RNC)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GCCUC

Length

5 nucleotides

Bulged bases

6OLI|1|t|C|2468

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6OLI_079 not in the Motif Atlas

Geometric match to HL_5TBW_044

Geometric discrepancy: 0.308

The information below is about HL_5TBW_044

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81100.1

Basepair signature

cWW

Number of instances in this motif group

4

Unit IDs

6OLI|1|t|G|2466
6OLI|1|t|C|2467
6OLI|1|t|C|2468
6OLI|1|t|U|2469
6OLI|1|t|C|2470

Current chains

Chain t

28S ribosomal RNA

Nearby chains

Chain D

5.8S ribosomal RNA; 5.8S rRNA