HL_6OLI_088

3D structure

PDB id

6OLI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of human ribosome nascent chain complex selectively stalled by a drug-like small molecule (USO1-RNC)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UGAACAG

Length

7 nucleotides

Bulged bases

6OLI|1|t|C|2793

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6OLI_088 not in the Motif Atlas

Homologous match to HL_5TBW_042

Geometric discrepancy: 0.0848

The information below is about HL_5TBW_042

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

6OLI|1|t|U|2789
6OLI|1|t|G|2790
6OLI|1|t|A|2791
6OLI|1|t|A|2792
6OLI|1|t|C|2793
6OLI|1|t|A|2794
6OLI|1|t|G|2795

Current chains

Chain t

28S ribosomal RNA

Nearby chains

Chain S

60S ribosomal protein L19