HL_6OLI_097

3D structure

PDB id

6OLI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of human ribosome nascent chain complex selectively stalled by a drug-like small molecule (USO1-RNC)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GGGAACGGGC

Length

10 nucleotides

Bulged bases

6OLI|1|t|A|3847, 6OLI|1|t|A|3848, 6OLI|1|t|C|3849

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6OLI_097 not in the Motif Atlas

Homologous match to HL_5TBW_051

Geometric discrepancy: 0.1319

The information below is about HL_5TBW_051

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_90642.8

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

7

Unit IDs

6OLI|1|t|G|3844
6OLI|1|t|G|3845
6OLI|1|t|G|3846
6OLI|1|t|A|3847
6OLI|1|t|A|3848
6OLI|1|t|C|3849
6OLI|1|t|G|3850
6OLI|1|t|G|3851
6OLI|1|t|G|3852
6OLI|1|t|C|3853

Current chains

Chain t

28S ribosomal RNA

Nearby chains

Chain B

60S ribosomal protein L3

Chain f

60S ribosomal protein L32