HL_6OLI_099

3D structure

PDB id

6OLI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of human ribosome nascent chain complex selectively stalled by a drug-like small molecule (USO1-RNC)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GCCCGGCC

Length

8 nucleotides

Bulged bases

6OLI|1|t|C|4107, 6OLI|1|t|G|4108

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6OLI_099 not in the Motif Atlas

Geometric match to HL_5TBW_018

Geometric discrepancy: 0.3209

The information below is about HL_5TBW_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_84570.1

Basepair signature

cWW-cWW-F

Number of instances in this motif group

6

Unit IDs

6OLI|1|t|G|4104
6OLI|1|t|C|4105
6OLI|1|t|C|4106
6OLI|1|t|C|4107
6OLI|1|t|G|4108
6OLI|1|t|G|4109
6OLI|1|t|C|4110
6OLI|1|t|C|4111

Current chains

Chain t

28S ribosomal RNA

Nearby chains

Chain a

60S ribosomal protein L27