HL_6OLI_101

3D structure

PDB id

6OLI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of human ribosome nascent chain complex selectively stalled by a drug-like small molecule (USO1-RNC)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UCAAACGGUAACG

Length

13 nucleotides

Bulged bases

6OLI|1|t|A|4176, 6OLI|1|t|C|4183

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6OLI_101 not in the Motif Atlas

Homologous match to HL_5TBW_055

Geometric discrepancy: 0.1177

The information below is about HL_5TBW_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19870.9

Basepair signature

cWW-tHH-cWW-tHS-F-F-tWW

Number of instances in this motif group

8

Unit IDs

6OLI|1|t|U|4172
6OLI|1|t|C|4173
6OLI|1|t|A|4174
6OLI|1|t|A|4175
6OLI|1|t|A|4176
6OLI|1|t|C|4177
6OLI|1|t|G|4178
6OLI|1|t|G|4179
6OLI|1|t|U|4180
6OLI|1|t|A|4181
6OLI|1|t|A|4182
6OLI|1|t|C|4183
6OLI|1|t|G|4184

Current chains

Chain t

28S ribosomal RNA

Nearby chains

Chain K

60S ribosomal protein L10

Chain U

60S ribosomal protein L21

Chain c

60S ribosomal protein L29