HL_6OLI_107

3D structure

PDB id

6OLI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of human ribosome nascent chain complex selectively stalled by a drug-like small molecule (USO1-RNC)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CGUUCAUAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6OLI_107 not in the Motif Atlas

Homologous match to HL_5TBW_061

Geometric discrepancy: 0.1116

The information below is about HL_5TBW_061

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_82661.1

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

6OLI|1|t|C|4379
6OLI|1|t|G|4380
6OLI|1|t|U|4381
6OLI|1|t|U|4382
6OLI|1|t|C|4383
6OLI|1|t|A|4384
6OLI|1|t|U|4385
6OLI|1|t|A|4386
6OLI|1|t|G|4387

Current chains

Chain t

28S ribosomal RNA

Nearby chains

Chain K

60S ribosomal protein L10

Chain n

60S ribosomal protein L40