HL_6OLI_108

3D structure

PDB id

6OLI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of human ribosome nascent chain complex selectively stalled by a drug-like small molecule (USO1-RNC)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

AGCAGAAU

Length

8 nucleotides

Bulged bases

6OLI|1|t|G|4437

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6OLI_108 not in the Motif Atlas

Homologous match to HL_5TBW_062

Geometric discrepancy: 0.0966

The information below is about HL_5TBW_062

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_79150.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

12

Unit IDs

6OLI|1|t|A|4436
6OLI|1|t|G|4437
6OLI|1|t|C|4438
6OLI|1|t|A|4439
6OLI|1|t|G|4440
6OLI|1|t|A|4441
6OLI|1|t|A|4442
6OLI|1|t|U|4443

Current chains

Chain t

28S ribosomal RNA

Nearby chains

Chain J

60S ribosomal protein L9

Chain n

60S ribosomal protein L40