HL_6OLI_124

3D structure

PDB id

6OLI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of human ribosome nascent chain complex selectively stalled by a drug-like small molecule (USO1-RNC)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

AUCUCGUCUGAUCU

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6OLI_124 not in the Motif Atlas

Homologous match to HL_4V9F_074

Geometric discrepancy: 0.1502

The information below is about HL_4V9F_074

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_97756.3

Basepair signature

cWW-cSH-cWS-F-tSW-cSW-F-cWW-F-F-F

Number of instances in this motif group

7

Unit IDs

6OLI|1|E|A|32
6OLI|1|E|U|33
6OLI|1|E|C|34
6OLI|1|E|U|35
6OLI|1|E|C|36
6OLI|1|E|G|37
6OLI|1|E|U|38
6OLI|1|E|C|39
6OLI|1|E|U|40
6OLI|1|E|G|41
6OLI|1|E|A|42
6OLI|1|E|U|43
6OLI|1|E|C|44
6OLI|1|E|U|45

Current chains

Chain E

5S ribosomal RNA

Nearby chains

Chain F

60S ribosomal protein L5

Chain L

60S ribosomal protein L11

Chain t

Large subunit ribosomal RNA; LSU rRNA