HL_6OLI_126
3D structure
- PDB id
- 6OLI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of human ribosome nascent chain complex selectively stalled by a drug-like small molecule (USO1-RNC)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- GCCCGAGCCGC
- Length
- 11 nucleotides
- Bulged bases
- 6OLI|1|S2|G|836, 6OLI|1|S2|G|838, 6OLI|1|S2|C|840
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6OLI_126 not in the Motif Atlas
- Geometric match to HL_2Y9H_004
- Geometric discrepancy: 0.3939
- The information below is about HL_2Y9H_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_97696.1
- Basepair signature
- cWW-F-F
- Number of instances in this motif group
- 6
Unit IDs
6OLI|1|S2|G|832
6OLI|1|S2|C|833
6OLI|1|S2|C|834
6OLI|1|S2|C|835
6OLI|1|S2|G|836
6OLI|1|S2|A|837
6OLI|1|S2|G|838
6OLI|1|S2|C|839
6OLI|1|S2|C|840
6OLI|1|S2|G|841
6OLI|1|S2|C|842
Current chains
- Chain S2
- 18S ribosomal RNA
Nearby chains
- Chain SE
- 40S ribosomal protein S4, X isoform
- Chain SJ
- 40S ribosomal protein S9
- Chain SY
- 40S ribosomal protein S24
Coloring options: