HL_6OLZ_062

3D structure

PDB id

6OLZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human ribosome nascent chain complex (PCSK9-RNC) stalled by a drug-like molecule with PP tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UUCAGUACG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6OLZ_062 not in the Motif Atlas

Homologous match to HL_8C3A_059

Geometric discrepancy: 0.366

The information below is about HL_8C3A_059

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_34636.1

Basepair signature

cWW-cWW-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

6OLZ|1|A2|U|4263
6OLZ|1|A2|U|4264
6OLZ|1|A2|C|4265
6OLZ|1|A2|A|4266
6OLZ|1|A2|G|4267
6OLZ|1|A2|U|4268
6OLZ|1|A2|A|4269
6OLZ|1|A2|C|4270
6OLZ|1|A2|G|4271

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain AL

60S ribosomal protein L13

Chain AQ

60S ribosomal protein L18

Chain AT

60S ribosomal protein L21

Chain Aa

60S ribosomal protein L27a

Chain Ao

60S ribosomal protein L36a