HL_6OLZ_101

3D structure

PDB id

6OLZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human ribosome nascent chain complex (PCSK9-RNC) stalled by a drug-like molecule with PP tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

AGGUGAAAUU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6OLZ_101 not in the Motif Atlas

Homologous match to HL_4V88_206

Geometric discrepancy: 0.2032

The information below is about HL_4V88_206

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.2

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

14

Unit IDs

6OLZ|1|B1|A|957
6OLZ|1|B1|G|958
6OLZ|1|B1|G|959
6OLZ|1|B1|U|960
6OLZ|1|B1|G|961
6OLZ|1|B1|A|962
6OLZ|1|B1|A|963
6OLZ|1|B1|A|964
6OLZ|1|B1|U|965
6OLZ|1|B1|U|966

Current chains

Chain B1

18S ribosomal RNA

Nearby chains

Chain A2

Large subunit ribosomal RNA; LSU rRNA

Chain BF

40S ribosomal protein S5

Chain BO

40S ribosomal protein S14

Chain Bx

mRNA