HL_6OLZ_127

3D structure

PDB id

6OLZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human ribosome nascent chain complex (PCSK9-RNC) stalled by a drug-like molecule with PP tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UGGUAAGCA

Length

9 nucleotides

Bulged bases

6OLZ|1|A2|G|1850

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6OLZ_127 not in the Motif Atlas

Geometric match to HL_8KAL_001

Geometric discrepancy: 0.3308

The information below is about HL_8KAL_001

Detailed Annotation

GNRA with extra cWW

Broad Annotation

GNRA with extra cWW

Motif group

HL_87268.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

16

Unit IDs

6OLZ|1|A2|U|1844
6OLZ|1|A2|G|1845
6OLZ|1|A2|G|1846
6OLZ|1|A2|U|1847
6OLZ|1|A2|A|1848
6OLZ|1|A2|A|1849
6OLZ|1|A2|G|1850
6OLZ|1|A2|C|1851
6OLZ|1|A2|A|1852

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain AI

60S ribosomal protein L10

Chain Ab

60S ribosomal protein L29