HL_6OLZ_140

3D structure

PDB id

6OLZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human ribosome nascent chain complex (PCSK9-RNC) stalled by a drug-like molecule with PP tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UUGAAAA

Length

7 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6OLZ_140 not in the Motif Atlas

Homologous match to HL_8VU0_002

Geometric discrepancy: 0.5516

The information below is about HL_8VU0_002

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

397

Unit IDs

6OLZ|1|Bv|U|32
6OLZ|1|Bv|U|33
6OLZ|1|Bv|G|34
6OLZ|1|Bv|A|35
6OLZ|1|Bv|A|36
6OLZ|1|Bv|A|37
6OLZ|1|Bv|A|38

Current chains

Chain Bv

tRNA

Nearby chains

Chain A2

Large subunit ribosomal RNA; LSU rRNA

Chain B1

Small subunit ribosomal RNA; SSU rRNA

Chain BQ

40S ribosomal protein S16

Chain Bx

mRNA