HL_6OM0_116

3D structure

PDB id

6OM0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human ribosome nascent chain complex (PCSK9-RNC) stalled by a drug-like molecule with AP and PE tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUCCCUCG

Length

8 nucleotides

Bulged bases

6OM0|1|t|C|4981, 6OM0|1|t|U|4984, 6OM0|1|t|C|4985

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6OM0_116 not in the Motif Atlas

Geometric match to HL_5TBW_018

Geometric discrepancy: 0.3961

The information below is about HL_5TBW_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_84570.1

Basepair signature

cWW-cWW-F

Number of instances in this motif group

6

Unit IDs

6OM0|1|t|C|4979
6OM0|1|t|U|4980
6OM0|1|t|C|4981
6OM0|1|t|C|4982
6OM0|1|t|C|4983
6OM0|1|t|U|4984
6OM0|1|t|C|4985
6OM0|1|t|G|4986

Current chains

Chain t

28S ribosomal RNA

Nearby chains

Chain SI

40S ribosomal protein S8