HL_6OM0_124

3D structure

PDB id

6OM0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human ribosome nascent chain complex (PCSK9-RNC) stalled by a drug-like molecule with AP and PE tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GCCCCGAAGGUAGAGC

Length

16 nucleotides

Bulged bases

6OM0|1|v|G|18, 6OM0|1|v|G|19, 6OM0|1|v|U|20, 6OM0|1|v|A|21

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6OM0_124 not in the Motif Atlas

Homologous match to HL_3TUP_001

Geometric discrepancy: 0.4888

The information below is about HL_3TUP_001

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_45175.1

Basepair signature

cWW-cWS-F-F

Number of instances in this motif group

5

Unit IDs

6OM0|1|v|G|10
6OM0|1|v|C|11
6OM0|1|v|C|12
6OM0|1|v|C|13
6OM0|1|v|C|14
6OM0|1|v|G|15
6OM0|1|v|A|16
6OM0|1|v|A|17
6OM0|1|v|G|18
6OM0|1|v|G|19
6OM0|1|v|U|20
6OM0|1|v|A|21
6OM0|1|v|G|22
6OM0|1|v|A|23
6OM0|1|v|G|24
6OM0|1|v|C|25

Current chains

Chain v

tRNA

Nearby chains

Chain t

Large subunit ribosomal RNA; LSU rRNA