HL_6OM6_047

3D structure

PDB id

6OM6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of trans-translation inhibitor bound to E. coli 70S ribosome with P site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGCAAG

Length

6 nucleotides

Bulged bases

6OM6|1|1|C|1870

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6OM6_047 not in the Motif Atlas

Homologous match to HL_5J7L_180

Geometric discrepancy: 0.2868

The information below is about HL_5J7L_180

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

6OM6|1|1|C|1868
6OM6|1|1|G|1869
6OM6|1|1|C|1870
6OM6|1|1|A|1871
6OM6|1|1|A|1872
6OM6|1|1|G|1873

Current chains

Chain 1

23S ribosomal RNA

Nearby chains