HL_6OM6_077

3D structure

PDB id

6OM6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of trans-translation inhibitor bound to E. coli 70S ribosome with P site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AACUGAGACACGGU

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6OM6_077 not in the Motif Atlas

Homologous match to HL_5J7L_008

Geometric discrepancy: 0.099

The information below is about HL_5J7L_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81205.3

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

6OM6|1|2|A|320
6OM6|1|2|A|321
6OM6|1|2|C|322
6OM6|1|2|U|323
6OM6|1|2|G|324
6OM6|1|2|A|325
6OM6|1|2|G|326
6OM6|1|2|A|327
6OM6|1|2|C|328
6OM6|1|2|A|329
6OM6|1|2|C|330
6OM6|1|2|G|331
6OM6|1|2|G|332
6OM6|1|2|U|333

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain u

30S ribosomal protein S16

Chain y

30S ribosomal protein S20